> NSFL1 (p97) cofactor (p47) (NSFL1C)
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UGID:133017     UniGene Hs.12865     Homo sapiens (human)   NSFL1C Order cDNA clone, Links
NSFL1 (p97) cofactor (p47) (NSFL1C)

Human protein-coding gene NSFL1C. Represented by 628 ESTs from 284 cDNA libraries. Corresponds to 4 reference sequences (different isoforms). [UniGene 133017 - Hs.12865]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001113312.1 PREDICTED: NSFL1 cofactor p47-like isoform 7 M. mulatta 100.0 371
XP_003905002.1 PREDICTED: NSFL1 cofactor p47 P. anubis 100.0 371
XP_003953711.1 PREDICTED: NSFL1 cofactor p47 P. troglodytes 100.0 371
NP_001193665.1 NSFL1C gene product H. sapiens 100.0 371
NP_938085.1 Nsfl1c gene product M. musculus 98.1 371
NP_001080187.1 p47 X. laevis 83.7 369
XP_003201235.1 PREDICTED: NSFL1 cofactor p47-like isoform 1 D. rerio 77.5 369
NP_610284.1 p47 D. melanogaster 50.4 226
Other hits (2 of 30) [Show all]SpeciesId(%)Len(aa)
NP_001231372.1 NSFL1C gene product S. scrofa 98.9 369
XP_003433246.2 PREDICTED: NSFL1 cofactor p47 isoform 1 C. lupus familiaris 98.7 371

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; lung; mixed; placenta; testis; eye; trachea; mammary gland; spleen; adrenal gland; nerve; tonsil; skin; thyroid; pituitary gland; embryonic tissue; prostate; kidney; pineal gland; bone; epididymis; uncharacterized tissue; liver; intestine; uterus; larynx; pharynx; mouth; connective tissue; lymph node; heart; thymus; pancreas; muscle; stomach; blood; adipose tissue; bone marrow; ovary; lymph; bladder; ascites; cervix; vascular; ganglia; esophagus; salivary gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 20
Map position: 20p13
UniSTS entry: Chr 20 SGC44590 [Map Viewer]
UniSTS entry: Chr 8 RH80523
UniSTS entry: Chr 20 WI-20603 [Map Viewer]
UniSTS entry: Chr 20 D20S562E
UniSTS entry: Chr 20 G20805
UniSTS entry: Chr 20 A006H16 [Map Viewer]
UniSTS entry: Chr 20 D20S735 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AF086909.1 Homo sapiens p47 mRNA, complete cds PA
AK128722.1 Homo sapiens cDNA FLJ46889 fis, clone UTERU3017995, highly similar to Homo sapiens likely ortholog of rat p47 (p47) P
AK001511.1 Homo sapiens cDNA FLJ10649 fis, clone NT2RP2005835, weakly similar to SHP1 PROTEIN P
NM_016143.4 Homo sapiens NSFL1 (p97) cofactor (p47) (NSFL1C), transcript variant 1, mRNA P
AF283774.2 Homo sapiens clone TCBAP0932 mRNA sequence P
AK223341.1 Homo sapiens mRNA for p47 protein isoform a variant, clone: TST04907 PA
AK223334.1 Homo sapiens mRNA for p47 protein isoform a variant, clone: TST01829 P
AK023585.1 Homo sapiens cDNA FLJ13523 fis, clone PLACE1005968
NM_018839.4 Homo sapiens NSFL1 (p97) cofactor (p47) (NSFL1C), transcript variant 2, mRNA P
BC002801.2 Homo sapiens NSFL1 (p97) cofactor (p47), mRNA (cDNA clone MGC:3347 IMAGE:3635947), complete cds PA
AK315433.1 Homo sapiens cDNA, FLJ96489, Homo sapiens likely ortholog of rat p47 (p47), mRNA P
AK093845.1 Homo sapiens cDNA FLJ36526 fis, clone TRACH2003347, highly similar to NSFL1 cofactor p47 P
AK297403.1 Homo sapiens cDNA FLJ55103 complete cds, highly similar to NSFL1 cofactor p47 P
AF078856.1 Homo sapiens p47 mRNA, complete cds PA
NM_001206736.1 Homo sapiens NSFL1 (p97) cofactor (p47) (NSFL1C), transcript variant 4, mRNA P
NR_038164.1 Homo sapiens NSFL1 (p97) cofactor (p47) (NSFL1C), transcript variant 3, non-coding RNA P

EST sequences (10 of 628) [Show all sequences]

AA948047.1 Clone IMAGE:1416048 lung 3' read A
AA969161.1 Clone IMAGE:1580294 mixed 3' read A
AA974960.1 Clone IMAGE:1555502 kidney 3' read A
R08844.1 Clone IMAGE:127469 mixed 3' read
AA993567.1 Clone IMAGE:1624676 embryonic tissue 3' read A
AA908648.1 Clone IMAGE:1522462 lung 3' read P
AI023344.1 Clone IMAGE:1655335 mixed 3' read P
AI028261.1 Clone IMAGE:1645556 testis 3' read
AI028262.1 Clone IMAGE:1645558 testis 3' read A
AI032681.1 Clone IMAGE:1655633 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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