> Vacuolar protein sorting 4 homolog A (S. cerevisiae) (VPS4A)
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UGID:148117     UniGene Hs.128420     Homo sapiens (human)   VPS4A Order cDNA clone, Links
Vacuolar protein sorting 4 homolog A (S. cerevisiae) (VPS4A)

Human protein-coding gene VPS4A. Represented by 485 ESTs from 228 cDNA libraries. Corresponds to reference sequence NM_013245.2. [UniGene 148117 - Hs.128420]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001093648.2 PREDICTED: vacuolar protein sorting-associated protein 4A M. mulatta 100.0 436
XP_003917149.1 PREDICTED: vacuolar protein sorting-associated protein 4A P. anubis 100.0 436
NP_037377.1 VPS4A gene product H. sapiens 100.0 436
NP_569053.1 Vps4a gene product M. musculus 99.8 436
NP_663711.1 Vps4a gene product R. norvegicus 99.8 436
XP_536805.2 PREDICTED: vacuolar protein sorting-associated protein 4A C. lupus familiaris 99.5 436
NP_001087722.1 vacuolar protein sorting 4 homolog A X. laevis 96.5 435
NP_001094432.1 vacuolar protein sorting 4 homolog b-like D. rerio 88.5 433
NP_573258.1 vacuolar protein sorting 4 D. melanogaster 84.0 437
NP_490816.4 Protein VPS-4 C. elegans 80.3 427
NP_015499.1 AAA family ATPase VPS4 S. cerevisiae 74.0 434
XP_001701670.1 AAA-ATPase of VPS4/SKD1 family C. reinhardtii 72.9 427
XP_958048.1 vacuolar protein sorting-associated protein VPS4 N. crassa 72.8 437
NP_180328.1 vacuolar protein-sorting-associated protein 4 A. thaliana 71.0 434
Other hits (2 of 61) [Show all]SpeciesId(%)Len(aa)
XP_001147558.3 PREDICTED: vacuolar protein sorting-associated protein 4A P. troglodytes 99.3 449
NP_001230347.1 VPS4A gene product S. scrofa 99.3 436

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; eye; mixed; intestine; testis; lung; placenta; bone; vascular; skin; kidney; ovary; blood; muscle; cervix; embryonic tissue; pancreas; uterus; bone marrow; prostate; connective tissue; tonsil; lymph node; adrenal gland; lymph; spinal cord; ascites; heart; stomach; liver; thyroid; mouth; spleen; mammary gland; amniotic fluid; nerve; pharynx; parathyroid; thymus
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 16
Map position: 16q22.1
UniSTS entry: Chr 16 RH69710 [Map Viewer]
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 1 L18426
UniSTS entry: Chr 1 D21S1698
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (14)

BC047932.1 Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae), mRNA (cDNA clone MGC:49835 IMAGE:5753632), complete cds PA
AK000200.1 Homo sapiens cDNA FLJ20193 fis, clone COLF0795 PA
AL133634.1 Homo sapiens mRNA; cDNA DKFZp434E0418 (from clone DKFZp434E0418); partial cds PA
NM_013245.2 Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae) (VPS4A), mRNA PA
AF155740.1 Homo sapiens vacuolar sorting protein 4 (VPS4) mRNA, partial cds P
AF159063.1 Homo sapiens SKD1-homolog mRNA, complete cds PA
AF112215.1 Homo sapiens SKD1 protein mRNA, complete cds PA
AK025850.1 Homo sapiens cDNA: FLJ22197 fis, clone HRC01216, highly similar to AF112215 Homo sapiens SKD1 protein mRNA PA
AF255952.1 Homo sapiens vacuolar protein sorting VPS4-1 (VPS4-1) gene, complete cds PA
AK315026.1 Homo sapiens cDNA, FLJ95967, Homo sapiens vacuolar protein sorting 4A (yeast) (VPS4A), mRNA P
AF132747.1 Homo sapiens SKD2 protein mRNA, complete cds P
AK092372.1 Homo sapiens cDNA FLJ35053 fis, clone OCBBF2018362
BC013021.2 Homo sapiens cDNA clone IMAGE:3350798, containing frame-shift errors PA
BC035121.1 Homo sapiens vacuolar protein sorting 4 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:5263362), complete cds PA

EST sequences (10 of 485) [Show all sequences]

AA973976.1 Clone IMAGE:1585298 lung 3' read A
AA975159.1 Clone IMAGE:1555317 kidney 3' read A
AA975485.1 Clone IMAGE:1561105 mixed 3' read A
AA977112.1 Clone IMAGE:1587270 uncharacterized tissue 3' read A
AA989448.1 Clone IMAGE:1607738 mammary gland 3' read A
AA996318.1 Clone IMAGE:1605887 kidney 3' read A
AI015167.1 Clone IMAGE:1622546 embryonic tissue 3' read A
AI066681.1 Clone IMAGE:1682309 skin 3' read A
AI066683.1 Clone IMAGE:1682313 skin 3' read A
AI082808.1 Clone IMAGE:1662408 mixed 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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