Chromosome 9 open reading frame 50 (C9orf50)

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UGID:146695 UniGene Hs.124223 Homo sapiens (human) C9orf50

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Chromosome 9 open reading frame 50 (C9orf50)

Human protein-coding gene C9orf50. Represented by 20 ESTs from 12 cDNA libraries. Corresponds to reference sequence NM_199350.3. [UniGene 146695 - Hs.124223]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_955382.3 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	C9orf50 gene product	H. sapiens	100.0	430
NP_932117.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	uncharacterized protein LOC73598	M. musculus	54.2	284
Other hits (2 of 8) [Show all]		Species	Id(%)	Len(aa)
XP_003911257.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: uncharacterized protein C9orf50 homolog	P. anubis	89.1	431
XP_001083243.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: uncharacterized protein C9orf50-like isoform 2	M. mulatta	88.2	431

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	testis; uncharacterized tissue; mixed; intestine; ovary; stomach; kidney

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

	Chromosome:	9
	Map position:	9q34.11

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

NM_199350.3	Homo sapiens chromosome 9 open reading frame 50 (C9orf50), mRNA	P
BC112353.1	Homo sapiens chromosome 9 open reading frame 50, mRNA (cDNA clone IMAGE:40024680), complete cds	P
AK093122.1	Homo sapiens cDNA FLJ35803 fis, clone TESTI2005979	P
JF442034.1	Homo sapiens C9ORF50s (C9orf50) mRNA, partial cds, alternatively spliced	PA

EST sequences (10 of 20) [Show all sequences]

BX096497.1	Clone IMAGp998B121962_;_IMAGE:795563	testis		PA
AA770485.1	Clone 1321332	testis	3' read	P
AI393130.1	Clone IMAGE:2111334	mixed	3' read	P
AW084476.1	Clone IMAGE:2558977	intestine	3' read	PA
AW118229.1	Clone IMAGE:2604981	mixed	3' read	P
AW291326.1	Clone IMAGE:2724166	uncharacterized tissue	3' read	A
AW468767.1	Clone IMAGE:2910778	mixed	3' read	P
BX953457.1	Clone DKFZp781L0146	uncharacterized tissue	5' read	P
AW958564.1		uncharacterized tissue		P
AW958565.1		uncharacterized tissue		P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria