> Lysine (K)-specific demethylase 2A (KDM2A)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:146673     UniGene Hs.124147     Homo sapiens (human)   KDM2A Order cDNA clone, Links
Lysine (K)-specific demethylase 2A (KDM2A)

Human protein-coding gene KDM2A. Represented by 515 ESTs from 260 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 146673 - Hs.124147]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001172828.1 PREDICTED: lysine-specific demethylase 2A isoform 6 P. troglodytes 100.0 1161
NP_036440.1 KDM2A gene product H. sapiens 100.0 1161
XP_001107511.1 PREDICTED: lysine-specific demethylase 2A-like M. mulatta 99.9 1161
XP_003909537.1 PREDICTED: lysine-specific demethylase 2A isoform 1 P. anubis 99.9 1161
XP_865102.2 PREDICTED: lysine-specific demethylase 2A isoform 4 C. lupus familiaris 99.8 1161
XP_001497145.1 PREDICTED: lysine-specific demethylase 2A isoform 1 E. caballus 99.8 1161
XP_591785.4 PREDICTED: lysine-specific demethylase 2A isoform 1 B. taurus 99.8 1161
XP_002709273.1 PREDICTED: F-box and leucine-rich repeat protein 11-like O. cuniculus 99.8 1146
NP_001153562.1 KDM2A gene product S. scrofa 99.7 1161
NP_001001984.2 Kdm2a gene product M. musculus 98.9 1160
NP_001085840.1 lysine-specific demethylase 2B X. laevis 69.3 1251
XP_001339797.2 PREDICTED: lysine-specific demethylase 2A D. rerio 65.3 1249
NP_649864.2 lysine (K)-specific demethylase 2, isoform B D. melanogaster 59.3 1221
NP_498419.2 Protein JHDM-1, isoform b C. elegans 51.8 220
Other hits (2 of 31) [Show all]SpeciesId(%)Len(aa)
XP_004019970.1 PREDICTED: LOW QUALITY PROTEIN: lysine-specific demethylase 2A O. aries 99.5 1156
NP_001101985.1 lysine-specific demethylase 2A R. norvegicus 99.1 1160

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: mixed; brain; uncharacterized tissue; eye; uterus; connective tissue; thymus; pharynx; larynx; blood; testis; embryonic tissue; lung; pancreas; placenta; lymph node; ascites; kidney; stomach; mammary gland; liver; thyroid; intestine; skin; ovary; heart; adrenal gland; nerve; tonsil; bladder; lymph; cervix; spinal cord; bone; prostate; mouth; esophagus; pituitary gland; amniotic fluid; spleen; muscle; salivary gland; vascular; parathyroid; umbilical cord; epididymis
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 11
Map position: 11q13.2
UniSTS entry: Chr 11 STS-Z40471
UniSTS entry: Chr 11 RH18199
UniSTS entry: Chr 11 RH12099
UniSTS entry: Chr 11 RH124989
UniSTS entry: Chr 11 MARC_17215-17216:1023895331:5
UniSTS entry: Chr 11 FBXL11
UniSTS entry: Chr 1 D1S1425
UniSTS entry: Chr 1 D10S16
UniSTS entry: Chr 1 GDB:434012
UniSTS entry: Chr 1 D15S1477
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (18)

BC047486.1 Homo sapiens F-box and leucine-rich repeat protein 11, mRNA (cDNA clone MGC:51265 IMAGE:5296445), complete cds PA
BC047371.1 Homo sapiens F-box and leucine-rich repeat protein 11, mRNA (cDNA clone MGC:48461 IMAGE:5270744), complete cds PA
AB023221.2 Homo sapiens mRNA for KIAA1004 protein, partial cds P
AL117517.1 Homo sapiens mRNA; cDNA DKFZp434M1735 (from clone DKFZp434M1735) A
AK128293.1 Homo sapiens cDNA FLJ46431 fis, clone THYMU3014620, highly similar to Homo sapiens F-box protein Lilina (LILINA) mRNA P
BC056905.1 Homo sapiens F-box and leucine-rich repeat protein 11, mRNA (cDNA clone IMAGE:6171996), partial cds PA
BC064360.1 Homo sapiens F-box and leucine-rich repeat protein 11, mRNA (cDNA clone MGC:74784 IMAGE:5534384), complete cds PA
AF179221.1 Homo sapiens F-box protein Lilina (LILINA) mRNA, complete cds P
AK022684.1 Homo sapiens cDNA FLJ12622 fis, clone NT2RM4001731, highly similar to Homo sapiens F-box protein Lilina (LILINA) mRNA P
AK024505.1 Homo sapiens mRNA for FLJ00115 protein, partial cds P
BC001203.1 Homo sapiens, Similar to f-box and leucine-rich repeat protein 11, clone IMAGE:3357072, mRNA, partial cds PA
NM_012308.2 Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 1, mRNA PA
AK096194.1 Homo sapiens cDNA FLJ38875 fis, clone MESAN2013936
AK299725.1 Homo sapiens cDNA FLJ51294 complete cds, highly similar to JmjC domain-containing histone demethylation protein 1A (EC 1.14.11.-) P
BC027467.1 Homo sapiens F-box and leucine-rich repeat protein 11, mRNA (cDNA clone IMAGE:4478268), with apparent retained intron PA
AB490246.1 Homo sapiens kdm2a mRNA for SF-KDM2A, complete cds PA
NM_001256405.1 Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 3, mRNA PA
NR_027473.1 Homo sapiens lysine (K)-specific demethylase 2A (KDM2A), transcript variant 2, non-coding RNA PA

EST sequences (10 of 515) [Show all sequences]

AA972523.1 Clone IMAGE:1435482 intestine 3' read
AA974213.1 Clone IMAGE:1586756 uncharacterized tissue 3' read A
AA991560.1 Clone IMAGE:1609701 mammary gland 3' read A
AI015261.1 Clone IMAGE:1641203 testis 3' read
AI032934.1 Clone IMAGE:1655291 mixed 3' read
AI076846.1 Clone IMAGE:1674071 mixed 3' read A
AI093127.1 Clone IMAGE:1694705 heart 3' read
AI093421.1 Clone IMAGE:1695235 uterus 3' read
AI141493.1 Clone IMAGE:1691876 heart 3' read A
T06467.1 Clone HFBDT87 brain


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help