Ring finger protein 39 (RNF39)

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UGID:145859 UniGene Hs.121178 Homo sapiens (human) RNF39

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Ring finger protein 39 (RNF39)

Human protein-coding gene RNF39. Represented by 35 ESTs from 20 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 145859 - Hs.121178]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_079512.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	RNF39 gene product	H. sapiens	100.0	419
NP_001107640.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	RNF39 gene product	P. troglodytes	99.8	419
NP_001093102.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	RING finger protein 39	M. musculus	85.2	351
Other hits (2 of 8) [Show all]		Species	Id(%)	Len(aa)
NP_001108418.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	RNF39 gene product	M. mulatta	97.1	419
XP_003897331.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: RING finger protein 39	P. anubis	97.1	419

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	intestine; mixed; uncharacterized tissue; eye; muscle; lung; prostate; larynx; heart; mammary gland; skin; kidney; ascites

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	6
Map position:	6p21.3
UniSTS entry:	Chr 6	G31541

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (5)

AF238315.1	Homo sapiens HZFw1 protein mRNA, complete cds	P
AF238316.1	Homo sapiens HZFw2 protein mRNA, complete cds	P
AF238317.1	Homo sapiens HZFw3 protein mRNA, complete cds	P
NM_025236.3	Homo sapiens ring finger protein 39 (RNF39), transcript variant 1, mRNA	PA
NM_170769.2	Homo sapiens ring finger protein 39 (RNF39), transcript variant 2, mRNA	PA

EST sequences (10 of 35) [Show all sequences]

BX107891.1	Clone IMAGp998F01239	mammary gland	5' read	P
AI168183.1	Clone IMAGE:1565722	mixed	3' read	P
R41116.1	Clone k845-f	heart
AI394569.1	Clone IMAGE:2108166	uncharacterized tissue	3' read	P
AI394625.1	Clone IMAGE:2108188	uncharacterized tissue	3' read	P
R50145.1	Clone IMAGE:153216	mammary gland	3' read
AI636239.1	Clone IMAGE:2296128	kidney	3' read	P
AI686305.1	Clone IMAGE:2249104	prostate	3' read	A
AI732406.1	Clone IMAGE:511305	intestine	3' read	A
AI733730.1	Clone IMAGE:511305	intestine	5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria