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Collagen, type XXII, alpha 1 (COL22A1)
Human protein-coding gene COL22A1. Represented by 51 ESTs from 30 cDNA libraries. Corresponds to reference sequence NM_152888.1. [UniGene 145061 - Hs.117169]
SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
| Best Hits and Hits from model organisms | Species | Id(%) | Len(aa) |
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COL22A1 gene product |
H. sapiens |
100.0 |
1625 |
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collagen, type XXII, alpha 1 precursor |
M. musculus |
89.3 |
1611 |
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PREDICTED: collagen alpha-1(XXII) chain |
D. rerio |
62.8 |
1617 |
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Protein LET-2, isoform b |
C. elegans |
46.4 |
1134 |
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collagen, type IX, alpha 3 precursor |
X. laevis |
45.9 |
394 |
| Other hits (2 of 42) [Show all] | Species | Id(%) | Len(aa) |
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PREDICTED: collagen alpha-1(XXII) chain isoform 1 |
P. troglodytes |
98.7 |
905 |
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PREDICTED: collagen alpha-1(XXII) chain isoform 1 |
P. anubis |
96.6 |
1630 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO Profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
embryonic tissue; prostate; uncharacterized tissue; pituitary gland; brain; lung; testis; parathyroid; skin; ovary; connective tissue; heart; pancreas; eye; mixed; adrenal gland; intestine; muscle |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
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Chromosome: |
8 |
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Map position: |
8q24.3 |
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UniSTS entry: |
Chr 8 |
RH102326 |
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UniSTS entry: |
Chr 8 |
RH102569 |
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SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (4)
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NM_152888.1 |
Homo sapiens collagen, type XXII, alpha 1 (COL22A1), mRNA |
PA |
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AF406780.1 |
Homo sapiens alpha 1 type XXII collagen mRNA, complete cds |
PA |
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BC144535.1 |
Homo sapiens collagen, type XXII, alpha 1, mRNA (cDNA clone MGC:178079 IMAGE:9053062), complete cds |
P |
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BC042075.1 |
Homo sapiens collagen, type XXII, alpha 1, mRNA (cDNA clone IMAGE:5742944), partial cds |
PA |
EST sequences (10 of 51) [Show all sequences]
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AA976185.1 |
Clone IMAGE:1558507 |
lung |
3' read |
A |
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AA977081.1 |
Clone IMAGE:1587180 |
uncharacterized tissue |
3' read |
A |
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AA988032.1 |
Clone IMAGE:1605145 |
lung |
3' read |
A |
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AA993145.1 |
Clone IMAGE:1622776 |
embryonic tissue |
3' read |
A |
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AI055813.1 |
Clone IMAGE:1750214 |
brain |
3' read |
P |
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AI090570.1 |
Clone IMAGE:1691575 |
heart |
3' read |
A |
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BX094632.1 |
Clone IMAGp998F10684_;_IMAGE:304905 |
parathyroid |
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BX097900.1 |
Clone IMAGp998O164458_;_IMAGE:1754343 |
testis |
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BX104734.1 |
Clone IMAGp998H084295_;_IMAGE:1691575 |
heart |
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AI207130.1 |
Clone IMAGE:1754343 |
testis |
3' read |
A |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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