> Splicing factor 3b, subunit 5, 10kDa (SF3B5)
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UGID:144041     UniGene Hs.110695     Homo sapiens (human)   SF3B5 Order cDNA clone, Links
Splicing factor 3b, subunit 5, 10kDa (SF3B5)

Human protein-coding gene SF3B5. Represented by 580 ESTs from 229 cDNA libraries. Corresponds to reference sequence NM_031287.2. [UniGene 144041 - Hs.110695]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
NP_780311.2 splicing factor 3B subunit 5 M. musculus 100.0 85
NP_001119564.1 splicing factor 3B subunit 5 R. norvegicus 100.0 85
XP_001370591.1 PREDICTED: splicing factor 3B subunit 5-like M. domestica 100.0 85
XP_002197218.1 PREDICTED: splicing factor 3B subunit 5 T. guttata 100.0 85
XP_001232553.1 PREDICTED: splicing factor 3B subunit 5 G. gallus 100.0 85
XP_003204131.1 PREDICTED: splicing factor 3B subunit 5-like M. gallopavo 100.0 85
XP_001087950.1 PREDICTED: splicing factor 3B subunit 5 M. mulatta 100.0 85
XP_003898132.1 PREDICTED: splicing factor 3B subunit 5 P. anubis 100.0 85
XP_001172705.1 PREDICTED: splicing factor 3B subunit 5 isoform 1 P. troglodytes 100.0 85
NP_112577.1 splicing factor 3B subunit 5 H. sapiens 100.0 85
XP_003638823.1 PREDICTED: splicing factor 3B subunit 5-like C. lupus familiaris 100.0 85
XP_001502492.1 PREDICTED: splicing factor 3B subunit 5-like E. caballus 100.0 85
XP_003121200.1 PREDICTED: splicing factor 3B subunit 5-like S. scrofa 100.0 85
NP_001020521.1 SF3B5 gene product B. taurus 100.0 85
XP_002714904.1 PREDICTED: splicing factor 3b, subunit 5 O. cuniculus 100.0 85
NP_001165233.1 splicing factor 3b, subunit 5 X. laevis 98.8 85
NP_001002478.1 sf3b5 gene product D. rerio 96.5 85
NP_652189.1 CG11985 D. melanogaster 87.1 84
Other hits (2 of 20) [Show all]SpeciesId(%)Len(aa)
XP_003215769.1 PREDICTED: splicing factor 3B subunit 5-like A. carolinensis 98.8 85
NP_001016441.1 sf3b5 gene product X. tropicalis 98.8 85

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: lung; brain; testis; eye; mixed; skin; kidney; blood; heart; prostate; pancreas; embryonic tissue; uterus; liver; placenta; intestine; parathyroid; adrenal gland; uncharacterized tissue; stomach; mammary gland; pharynx; muscle; spleen; salivary gland; bone; bone marrow; ovary; pineal gland; pituitary gland; cervix; vascular; bladder; thyroid; lymph; ascites; connective tissue; lymph node; tonsil; mouth; esophagus; nerve; larynx
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 6
Map position: 6q24.2
UniSTS entry: Chr 6 SGC31952 [Map Viewer]
UniSTS entry: Chr 6 RH41837
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

BC000198.1 Homo sapiens splicing factor 3b, subunit 5, 10kDa, mRNA (cDNA clone MGC:3133 IMAGE:3352960), complete cds PA
NM_031287.2 Homo sapiens splicing factor 3b, subunit 5, 10kDa (SF3B5), mRNA PA
AK312079.1 Homo sapiens cDNA, FLJ92360, Homo sapiens splicing factor 3b, subunit 5, 10kDa (SF3B5), mRNA P
AK074417.1 Homo sapiens cDNA FLJ23837 fis, clone KAT01950 PA

EST sequences (10 of 580) [Show all sequences]

AA863015.1 Clone IMAGE:1456460 kidney 3' read A
AA983224.1 Clone IMAGE:1591836 kidney 3' read
AA992020.1 Clone IMAGE:1618847 testis 3' read
AA995870.1 Clone IMAGE:1635732 kidney 3' read
AI000092.1 Clone IMAGE:1609804 mammary gland 3' read
AI000526.1 Clone IMAGE:1609092 mammary gland 3' read
AI015502.1 Clone IMAGE:1618675 testis 3' read
AI022184.1 Clone IMAGE:1654316 mixed 3' read
AI027849.1 Clone IMAGE:1671605 uncharacterized tissue 3' read
AI031752.1 Clone IMAGE:1649206 parathyroid 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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