> Heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRNPU)
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UGID:143648     UniGene Hs.106212     Homo sapiens (human)   HNRNPU Order cDNA clone, Links
Heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRNPU)

Human protein-coding gene HNRNPU. Represented by 2102 ESTs from 597 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 143648 - Hs.106212]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_003893726.1 PREDICTED: heterogeneous nuclear ribonucleoprotein U isoform 2 P. anubis 100.0 824
NP_114032.2 HNRNPU gene product H. sapiens 100.0 824
XP_001102264.2 PREDICTED: heterogeneous nuclear ribonucleoprotein U-like isoform 1 M. mulatta 99.9 831
NP_001070388.2 HNRNPU gene product B. taurus 99.8 824
XP_002717681.1 PREDICTED: heterogeneous nuclear ribonucleoprotein U isoform 1 O. cuniculus 99.8 824
XP_003130615.3 PREDICTED: heterogeneous nuclear ribonucleoprotein U S. scrofa 99.6 812
NP_058085.2 Hnrnpu gene product M. musculus 99.1 799
NP_001084218.1 heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) X. laevis 82.4 772
NP_001028767.2 heterogeneous nuclear ribonucleoprotein U D. rerio 70.6 794
Other hits (2 of 26) [Show all]SpeciesId(%)Len(aa)
NP_476480.2 Hnrnpu gene product R. norvegicus 99.1 797
XP_001494086.3 PREDICTED: heterogeneous nuclear ribonucleoprotein U E. caballus 98.9 641

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; lung; embryonic tissue; uncharacterized tissue; skin; placenta; intestine; blood; kidney; uterus; mixed; liver; eye; mammary gland; mouth; thymus; lymph; prostate; connective tissue; bone; pancreas; parathyroid; ascites; cervix; trachea; bone marrow; esophagus; muscle; adrenal gland; thyroid; heart; ovary; bladder; spleen; vascular; pituitary gland; nerve; lymph node; stomach; amniotic fluid; spinal cord; pharynx; adipose tissue; larynx; ear; salivary gland; ganglia; umbilical cord; epididymis; tonsil; pineal gland
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 1
Map position: 1q44
UniSTS entry: Chr 14 A007A33 [Map Viewer]
UniSTS entry: Chr 14 D14S1285
UniSTS entry: Chr 1 MARC_20677-20678:1024509130:1
UniSTS entry: Chr 1 MARC_12257-12258:1044472182:2
UniSTS entry: Chr 1 C86794
UniSTS entry: Chr 7 GDB:6028664
UniSTS entry: Chr 7 WI-7584
UniSTS entry: Chr 7 RH18125 [Map Viewer]
UniSTS entry: Chr 7 HNRPU
UniSTS entry: Chr 1 SHGC-76609 [Map Viewer]
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

AF068846.1 Homo sapiens scaffold attachment factor A (SAF-A) mRNA, complete cds PA
AF461014.1 Homo sapiens unknown mRNA PA
AK130669.1 Homo sapiens cDNA FLJ27159 fis, clone SYN00850 P
AK126868.1 Homo sapiens cDNA FLJ44920 fis, clone BRAMY3011501, highly similar to Heterogeneous nuclear ribonucleoprotein U P
NM_004501.3 Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRNPU), transcript variant 2, mRNA P
BC003367.1 Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone MGC:5216 IMAGE:2900876), complete cds PA
BC003621.2 Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone MGC:1992 IMAGE:2966453), complete cds PA
NM_031844.2 Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) (HNRNPU), transcript variant 1, mRNA P
BC007950.2 Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone IMAGE:4299389), partial cds PA
BC015782.1 Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone MGC:23593 IMAGE:4857112), complete cds PA
AK307661.1 Homo sapiens cDNA, FLJ97609 P
BC024767.1 Homo sapiens heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), mRNA (cDNA clone MGC:29899 IMAGE:4993703), complete cds PA
AK095525.1 Homo sapiens cDNA FLJ38206 fis, clone FCBBF1000449
BC034925.1 Homo sapiens, Similar to heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), clone IMAGE:3953856, mRNA, partial cds PA
AK297119.1 Homo sapiens cDNA FLJ54020 complete cds, highly similar to Heterogeneous nuclear ribonucleoprotein U P
X65488.1 H.sapiens U21.1 mRNA P

EST sequences (10 of 2102) [Show all sequences]

AA863342.1 Clone IMAGE:1456803 kidney 3' read A
AA961897.1 Clone IMAGE:1598721 uncharacterized tissue 3' read A
AA968623.1 Clone IMAGE:1578366 mixed 3' read
AA970052.1 Clone IMAGE:1581678 mixed 3' read A
AA988094.1 Clone IMAGE:1603879 lung 3' read A
AA989068.1 Clone IMAGE:1602913 lung 3' read P
AA989513.1 Clone IMAGE:1606294 kidney 3' read
R16427.1 Clone IMAGE:129327 mixed 5' read P
AA993499.1 Clone IMAGE:1621587 testis 3' read A
AA993769.1 Clone IMAGE:1621683 testis 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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