Chemokine (C-C motif) ligand 16 (CCL16)

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UGID:132657 UniGene Hs.10458 Homo sapiens (human) CCL16

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Chemokine (C-C motif) ligand 16 (CCL16)

Human protein-coding gene CCL16. Represented by 8 ESTs from 6 cDNA libraries. Corresponds to reference sequence NM_004590.2. [UniGene 132657 - Hs.10458]

SELECTED PROTEIN SIMILARITIES

Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.

Best Hits and Hits from model organisms		Species	Id(%)	Len(aa)
NP_004581.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	CCL16 gene product	H. sapiens	100.0	119
XP_003912692.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: c-C motif chemokine 16	P. anubis	100.0	111
Other hits (2 of 6) [Show all]		Species	Id(%)	Len(aa)
XP_511806.2 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: c-C motif chemokine 16	P. troglodytes	99.2	119
XP_001112513.1 Conserved domains (CDD) Gene summary Protein sequence Protein/EST matches (ProtEST) Protein/protein matches (BLink)	PREDICTED: c-C motif chemokine 16-like	M. mulatta	99.1	111

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	GEO Profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	liver; nerve

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	17
Map position:	17q11.2
UniSTS entry:	Chr 17	RH98255
UniSTS entry:	Chr 1	D11S2921
UniSTS entry:	Chr 17	D17S2005

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AF055467.1	Homo sapiens monotactin-1 mRNA, complete cds	PA
AF039955.1	Homo sapiens liver CC chemokine-1 precursor (SCYA16) mRNA, complete cds	P
NM_004590.2	Homo sapiens chemokine (C-C motif) ligand 16 (CCL16), mRNA	P
BC099662.3	Homo sapiens chemokine (C-C motif) ligand 16, mRNA (cDNA clone MGC:117051 IMAGE:40009719), complete cds	P
U91746.1	Homo sapiens IL-10-inducible chemokine (HCC-4) mRNA, complete cds	P
AB007454.1	Homo sapiens mRNA for chemokine LEC precursor, complete cds	P

EST sequences (8)

BX284026.1	Clone IMAGp998D2046	liver	5' read	P
BP428830.1	Clone LEU0490_14_A6			P
AW827147.1	Clone IMAGE:2692823	liver	5' read	A
DR004021.1	Clone TC117298	liver	5' read	P
DC362779.1	Clone LIVER2004077	liver	5' read
BQ722834.1	Clone IMAGE:6190743	nerve	5' read	PA
T58775.1	Clone IMAGE:77539	liver	3' read	A
T58847.1	Clone IMAGE:77539	liver	5' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria