> Soc-2 suppressor of clear homolog (C. elegans) (SHOC2)
NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Help
Query Tips
Build Info
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
EST
SRA

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:143287     UniGene Hs.104315     Homo sapiens (human)   SHOC2 Order cDNA clone, Links
Soc-2 suppressor of clear homolog (C. elegans) (SHOC2)

Human protein-coding gene SHOC2. Represented by 371 ESTs from 158 cDNA libraries. Corresponds to 2 reference sequences (different isoforms). [UniGene 143287 - Hs.104315]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_001087610.1 PREDICTED: leucine-rich repeat protein SHOC-2 isoform 3 M. mulatta 100.0 581
XP_521602.2 PREDICTED: leucine-rich repeat protein SHOC-2 isoform 2 P. troglodytes 100.0 581
NP_031399.2 SHOC2 gene product H. sapiens 100.0 581
XP_535013.2 PREDICTED: leucine-rich repeat protein SHOC-2 isoform 1 C. lupus familiaris 100.0 581
XP_001496623.1 PREDICTED: leucine-rich repeat protein SHOC-2 E. caballus 100.0 581
XP_001927528.1 PREDICTED: leucine-rich repeat protein SHOC-2 S. scrofa 100.0 581
NP_001095413.1 SHOC2 gene product B. taurus 100.0 581
XP_004020244.1 PREDICTED: leucine-rich repeat protein SHOC-2 isoform 1 O. aries 100.0 581
XP_003904303.1 PREDICTED: leucine-rich repeat protein SHOC-2 P. anubis 99.8 581
NP_001161977.1 Shoc2 gene product M. musculus 99.1 581
NP_001080350.1 leucine-rich repeat protein SHOC-2 X. laevis 95.7 576
NP_001038251.1 shoc2 gene product D. rerio 93.9 560
NP_732231.2 Sur-8, isoform A D. melanogaster 65.7 521
NP_001021259.1 Protein SOC-2, isoform a C. elegans 60.7 552
Other hits (2 of 28) [Show all]SpeciesId(%)Len(aa)
NP_001013173.1 Shoc2 gene product R. norvegicus 99.1 581
XP_001513272.2 PREDICTED: leucine-rich repeat protein SHOC-2 O. anatinus 98.9 536

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; uterus; lymph node; muscle; uncharacterized tissue; intestine; connective tissue; embryonic tissue; lung; heart; ovary; blood; esophagus; vascular; mouth; trachea; mixed; placenta; bone; liver; mammary gland; bone marrow; stomach; prostate; skin; bladder; eye; cervix; kidney; pancreas; thyroid; thymus; adrenal gland; pharynx; larynx; nerve; pineal gland; adipose tissue; parathyroid; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 10
Map position: 10q25
UniSTS entry: Chr 10 G20338
UniSTS entry: Chr 10 A005M36 [Map Viewer]
UniSTS entry: Chr 10 RH103645
UniSTS entry: Chr 10 SHOC2_8774
UniSTS entry: RH80921
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (11)

AF054828.1 Homo sapiens leucine-rich repeat protein SHOC-2 (SHOC-2) mRNA, complete cds P
AF068920.1 Homo sapiens Ras-binding protein SUR-8 mRNA, complete cds P
BC044752.1 Homo sapiens soc-2 suppressor of clear homolog (C. elegans), mRNA (cDNA clone IMAGE:4826955) PA
AB020669.1 Homo sapiens mRNA for KIAA0862 protein, partial cds P
BC050445.1 Homo sapiens soc-2 suppressor of clear homolog (C. elegans), mRNA (cDNA clone MGC:54207 IMAGE:6067669), complete cds PA
BX649055.1 Homo sapiens mRNA; cDNA DKFZp779A2425 (from clone DKFZp779A2425) PA
NM_007373.3 Homo sapiens soc-2 suppressor of clear homolog (C. elegans) (SHOC2), transcript variant 1, mRNA PA
AK292833.1 Homo sapiens cDNA FLJ76498 complete cds, highly similar to Homo sapiens soc-2 suppressor of clear homolog (C. elegans) (SHOC2), mRNA P
AK090820.1 Homo sapiens cDNA FLJ33501 fis, clone BRAMY2004363, highly similar to Leucine-rich repeat protein SHOC-2 P
AK293271.1 Homo sapiens cDNA FLJ60412 complete cds, highly similar to Leucine-rich repeat protein SHOC-2 P
NM_001269039.1 Homo sapiens soc-2 suppressor of clear homolog (C. elegans) (SHOC2), transcript variant 2, mRNA PA

EST sequences (10 of 371) [Show all sequences]

AA961164.1 Clone IMAGE:1578910 mixed 3' read A
CB047563.1 Clone IMAGE:3253404 kidney 5' read A
BX091749.1 Clone IMAGp998H21204_;_IMAGE:139844 placenta
R25429.1 Clone IMAGE:132267 placenta 5' read
R26259.1 Clone IMAGE:132267 placenta 3' read
AI206628.1 Clone IMAGE:1942896 uncharacterized tissue 3' read
AI208301.1 Clone IMAGE:1837132 testis 3' read
AI202318.1 Clone IMAGE:1943461 prostate 3' read A
AI262963.1 Clone IMAGE:2028280 kidney 3' read
AI268184.1 Clone IMAGE:1880499 mixed 3' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help