> Spermatogenesis associated 20 (SPATA20)
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UGID:143131     UniGene Hs.103147     Homo sapiens (human)   SPATA20 Order cDNA clone, Links
Spermatogenesis associated 20 (SPATA20)

Human protein-coding gene SPATA20. Represented by 653 ESTs from 233 cDNA libraries. Corresponds to 3 reference sequences (different isoforms). [UniGene 143131 - Hs.103147]

SELECTED PROTEIN SIMILARITIES
Comparison of cluster transcripts with RefSeq proteins. The alignments can suggest function of the cluster.
Best Hits and Hits from model organismsSpeciesId(%)Len(aa)
XP_511882.2 PREDICTED: spermatogenesis-associated protein 20 isoform 8 P. troglodytes 100.0 801
NP_073738.2 SPATA20 gene product H. sapiens 100.0 801
XP_001099622.1 PREDICTED: spermatogenesis-associated protein 20 isoform 4 M. mulatta 99.8 801
XP_003912789.1 PREDICTED: spermatogenesis-associated protein 20 isoform 2 P. anubis 99.8 801
NP_659076.2 Spata20 gene product M. musculus 92.3 789
XP_001920588.3 PREDICTED: spermatogenesis-associated protein 20 D. rerio 67.4 764
NP_192229.3 uncharacterized protein A. thaliana 58.6 473
NP_495615.2 Protein B0495.5 C. elegans 57.7 447
NP_610953.1 CG8613 D. melanogaster 56.0 516
Other hits (2 of 43) [Show all]SpeciesId(%)Len(aa)
XP_548202.2 PREDICTED: spermatogenesis-associated protein 20 C. lupus familiaris 97.1 788
NP_001076876.1 SPATA20 gene product B. taurus 97.1 788

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO Profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; testis; prostate; mouth; blood; uterus; skin; larynx; adrenal gland; salivary gland; ovary; amniotic fluid; kidney; uncharacterized tissue; eye; embryonic tissue; lung; thymus; liver; pancreas; bladder; intestine; ascites; mixed; tonsil; trachea; bone marrow; lymph node; cervix; mammary gland; thyroid; placenta; connective tissue; spleen; vascular; esophagus; pituitary gland; heart; bone; ganglia; adipose tissue; stomach
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17q21.33
UniSTS entry: Chr 17 G31146
UniSTS entry: Chr 17 RH12494 [Map Viewer]
UniSTS entry: Chr 17 MARC_11627-11628:1002815904:1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (16)

BC065526.1 Homo sapiens spermatogenesis associated 20, mRNA (cDNA clone MGC:70686 IMAGE:6149633), complete cds PA
AK025000.1 Homo sapiens cDNA: FLJ21347 fis, clone COL02724 PA
AK025622.1 Homo sapiens cDNA: FLJ21969 fis, clone HEP05692 PA
DQ238597.1 Homo sapiens SSP411 (SPATA20) mRNA, complete cds PA
BC111029.1 Homo sapiens spermatogenesis associated 20, mRNA (cDNA clone MGC:111032 IMAGE:5245538), complete cds PA
NM_022827.3 Homo sapiens spermatogenesis associated 20 (SPATA20), transcript variant 1, mRNA PA
AK225189.1 Homo sapiens mRNA for sperm protein SSP411 variant, clone: COL02724 P
BC017468.1 Homo sapiens spermatogenesis associated 20, mRNA (cDNA clone IMAGE:3906576), partial cds PA
AK291805.1 Homo sapiens cDNA FLJ77675 complete cds P
AK310416.1 Homo sapiens cDNA, FLJ17458 P
BC025255.1 Homo sapiens spermatogenesis associated 20, mRNA (cDNA clone MGC:39131 IMAGE:5019010), complete cds PA
AK092731.1 Homo sapiens cDNA FLJ35412 fis, clone SMINT2000441, highly similar to Homo sapiens spermatogenesis associated 20 (SPATA20), mRNA P
AL137367.1 Homo sapiens mRNA; cDNA DKFZp434F1826 (from clone DKFZp434F1826)
AF086245.1 Homo sapiens full length insert cDNA clone ZD38B07 PA
NM_001258372.1 Homo sapiens spermatogenesis associated 20 (SPATA20), transcript variant 2, mRNA PA
NM_001258373.1 Homo sapiens spermatogenesis associated 20 (SPATA20), transcript variant 3, mRNA PA

EST sequences (10 of 653) [Show all sequences]

AA993211.1 Clone IMAGE:1625076 embryonic tissue 3' read PA
AI015277.1 Clone IMAGE:1641217 testis 3' read A
AI015389.1 Clone IMAGE:1618357 testis 3' read A
AI050708.1 Clone IMAGE:1640010 testis 3' read A
AI088281.1 Clone IMAGE:1693695 heart 3' read A
CB048714.1 Clone IMAGE:3270957 prostate 5' read P
CB048713.1 Clone IMAGE:3270957 prostate 3' read PA
CB106664.1 Clone L3SNU475-7-B09 liver 5' read P
CB107643.1 Clone L3SNU475-24-A02 liver 5' read P
CB152388.1 Clone B1T694954-20-G07 brain 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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