LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM2)

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UGID:143121 UniGene Hs.103106 Homo sapiens (human) LSM2

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LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM2)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_001103571.1	snRNP core protein SMX5 isoform 2	M. musculus	100.0	94
XP_001060866.1	PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm2 (SnRNP core Sm-like protein Sm-x5) (G7b protein) isoform 2	R. norvegicus	100.0	94
NP_571571.1	smx5	D. rerio	100.0	94
NP_001140070.1	U6 snRNA-associated Sm-like protein LSm2	S. salar	100.0	94
NP_001106211.1	LSM2 homolog, U6 small nuclear RNA associated	X. laevis	100.0	94
NP_001016402.1	LSM2 homolog, U6 small nuclear RNA associated	X. tropicalis	100.0	94
XP_001105870.1	PREDICTED: LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)	M. mulatta	100.0	94
NP_067000.1	LSM2 homolog, U6 small nuclear RNA associated	H. sapiens	100.0	94
XP_532081.2	PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm2 (SnRNP core Sm-like protein Sm-x5) (G7b protein)	C. lupus familiaris	100.0	94
NP_001116608.1	LSM2 homolog, U6 small nuclear RNA associated	S. scrofa	100.0	94
NP_001094647.1	LSM2 homolog, U6 small nuclear RNA associated	B. taurus	100.0	94
NP_648570.1	CG10418	D. melanogaster	96.8	94
NP_506348.2	GUT differentiation defective family member (gut-2)	C. elegans	88.7	96
NP_563682.1	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	A. thaliana	77.8	90
XP_001690345.1	Sm-D1 protein	C. reinhardtii	74.4	90
NP_009527.1	Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; Lsm2p	S. cerevisiae	69.5	94
XP_327668.1	hypothetical protein	N. crassa	55.2	172

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	brain; uterus; heart; lung; ovary; stomach; vascular; eye; liver; testis; embryonic tissue; mixed; placenta; intestine; mouth; uncharacterized tissue; skin; pancreas; muscle; adrenal gland; cervix; tonsil; prostate; mammary gland; thymus; connective tissue; kidney; lymph; blood; thyroid; bone; lymph node; salivary gland; bladder

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	6
Map position:	6p21.3
UniSTS entry:	Chr 6	STS-AA035265

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (9)

AJ245416.1	Homo sapiens mRNA for G7b protein (G7b gene, located in the class III region of the major histocompatibility complex	P
CR542157.1	Homo sapiens full open reading frame cDNA clone RZPDo834D0124D for gene LSM2, LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae); complete cds, without stopcodon	P
CR542146.1	Homo sapiens full open reading frame cDNA clone RZPDo834F0523D for gene LSM2, LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae); complete cds, incl. stopcodon	P
CR601536.1	full-length cDNA clone CS0DF025YA04 of Fetal brain of Homo sapiens (human)	P
AF182288.1	Homo sapiens U6 snRNA-associated Sm-like protein LSm2 mRNA, complete cds	PA
AF196468.1	Homo sapiens SMX5-like protein mRNA, complete cds	P
NM_021177.3	Homo sapiens LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM2), mRNA	PA
AF136977.1	Homo sapiens snRNP core SM-like protein SM-x5 mRNA, complete cds	PA
BC009192.2	Homo sapiens LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae), mRNA (cDNA clone MGC:15227 IMAGE:3842537), complete cds	PA

EST sequences (10 of 186) [Show all sequences]

AA910624.1	Clone IMAGE:1518448	uncharacterized tissue	3' read	A
AI005199.1	Clone IMAGE:1632202	mammary gland	3' read	PA
AI014400.1	Clone IMAGE:1635364	kidney	3' read	A
AI015140.1	Clone IMAGE:1622155	embryonic tissue	3' read	A
AI028198.1	Clone IMAGE:1645144	testis	3' read	A
AI057218.1	Clone IMAGE:1675003	mixed	3' read	A
AI082376.1	Clone IMAGE:1637942	mammary gland	3' read	A
AI139011.1	Clone IMAGE:1736134	testis	3' read	A
BX111786.1	Clone IMAGp998G23827_;_IMAGE:359854	heart		A
AI261924.1	Clone IMAGE:1869051	kidney	3' read	PA

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria