Carbohydrate (chondroitin) synthase 1 (chys1)

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Finding cDNAs

UGID:2439929 UniGene Dr.78655 Danio rerio (zebrafish) chys1

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Carbohydrate (chondroitin) synthase 1 (chys1)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_997843.1	chondroitin sulfate synthase 1	D. rerio	100.0	800
NP_001074632.1	chondroitin sulfate synthase 1	M. musculus	77.8	790
NP_055733.2	chondroitin sulfate synthase 1	H. sapiens	77.8	801

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	mixed; whole body; muscle; reproductive system; kidney

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	Un\|189546628
UniSTS entry:		fc27h05.x1
UniSTS entry:		fc27h05.x1

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

	BC064670.1	Danio rerio carbohydrate (chondroitin) synthase 1, mRNA (cDNA clone MGC:64191 IMAGE:6798417), complete cds	PA
	NM_212678.1	Danio rerio carbohydrate (chondroitin) synthase 1 (chys1), mRNA	PA

EST sequences (10 of 20) [Show all sequences]

AI667408.1	Clone IMAGE:3724185	mixed	3' read	A
AI722477.1	Clone IMAGE:3722649	mixed	3' read
AI722955.1	Clone IMAGE:3722649	mixed	5' read	P
AI722956.1	Clone IMAGE:3722651	mixed	5' read	P
AI794393.1	Clone IMAGE:3724185	mixed	5' read	P
CD285323.1	Clone IMAGE:6525634	kidney	5' read
CK024447.1	Clone IMAGE:7050093	whole body	5' read	P
CK698188.1	Clone IMAGE:7163816	whole body	5' read
CR929078.1	Clone 235-B08-2	whole body		P
DR724418.1	Clone IMAGE:7991509	whole body	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria