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UGID:2439839     UniGene Dr.78565     Danio rerio (zebrafish)   rad54l Order cDNA clone, Links
RAD54-like (S. cerevisiae) (rad54l)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_957438.1 RAD54-like D. rerio 100.0 737
NP_003570.2 RAD54-like protein H. sapiens 82.7 746
NP_033041.3 RAD54 like M. musculus 81.6 746
NP_492438.1 RADiation sensitivity abnormal/yeast RAD-related family member (rad-54) C. elegans 62.6 690
NP_476661.1 okra D. melanogaster 61.3 745
XP_331124.1 hypothetical protein ( (AB032901) Rad54 homolog N. crassa 58.2 694
NP_011352.1 DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family; Rad54p S. cerevisiae 55.5 613
XP_001702507.1 predicted protein C. reinhardtii 54.0 532
NP_188552.3 ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase/ nucleic acid binding A. thaliana 51.8 666
NP_001085120.1 hypothetical protein LOC432195 X. laevis 46.0 674

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
Restricted Expression: reproductive system [show more like this]
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: reproductive system; whole body; mixed; uncharacterized tissue; fin
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: Un|189540646
UniSTS entry: fd08b10.x1
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

BC046050.1 Danio rerio RAD54-like (S. cerevisiae), mRNA (cDNA clone MGC:56289 IMAGE:5602782), complete cds PA
NM_201144.1 Danio rerio RAD54-like (S. cerevisiae) (rad54l), mRNA PA

EST sequences (10 of 29) [Show all sequences]

AI666997.1 Clone IMAGE:3722311 mixed 5' read P
AI957917.1 Clone IMAGE:3730267 mixed 3' read PA
AI959260.1 Clone IMAGE:3730267 mixed 5' read P
BM776879.1 Clone IMAGE:5602782 whole body 5' read P
AL918671.1 Clone 051-F11-2 whole body PA
AL919546.1 Clone 064-F03-2 whole body P
CB359160.1 Clone IMAGE:6901302 whole body 5' read P
CK679851.1 Clone IMAGE:7141302 whole body 5' read P
CK688215.1 Clone IMAGE:7151254 whole body 5' read P
CN015224.1 Clone IMAGE:7222114 whole body 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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