ER degradation enhancer, mannosidase alpha-like 1 (edem1)

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Finding cDNAs

UGID:106784 UniGene Dr.11486 Danio rerio (zebrafish) edem1

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ER degradation enhancer, mannosidase alpha-like 1 (edem1)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_957483.1	ER degradation enhancer, mannosidase alpha-like 1	D. rerio	100.0	523
NP_001091440.1	hypothetical protein LOC100049149	X. laevis	84.5	554
NP_619618.1	ER degradation enhancer, mannosidase alpha-like 1	M. musculus	81.6	651
NP_055489.1	ER degradation enhancer, mannosidase alpha-like 1	H. sapiens	81.1	656
NP_501802.2	hypothetical protein C47E12.3	C. elegans	61.0	526
NP_609611.1	Edem2	D. melanogaster	49.2	459
NP_564288.1	glycoside hydrolase family 47 protein	A. thaliana	47.6	468

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources. [Show more entries with profiles like this]
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	whole body; uncharacterized tissue; reproductive system; muscle; fin; eye; kidney; mixed; bone; brain

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:	6
UniSTS entry:		fi87d05.x1
UniSTS entry:		fb66b10.y1
UniSTS entry:		fk23c04.y1
UniSTS entry:		fd17h05.y1

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

BC045461.1	Danio rerio ER degradation enhancer, mannosidase alpha-like 1, mRNA (cDNA clone MGC:55816 IMAGE:3817790), complete cds	PA
NM_201189.1	Danio rerio ER degradation enhancer, mannosidase alpha-like 1 (edem1), mRNA	PA
BC165707.1	Danio rerio ER degradation enhancer, mannosidase alpha-like 1, mRNA (cDNA clone MGC:192795 IMAGE:100061263), complete cds	P

EST sequences (10 of 39) [Show all sequences]

AI545936.1	Clone IMAGE:3716827	mixed	5' read	P
AI883245.1	Clone IMAGE:2351865	whole body	5' read
AW342780.1	Clone IMAGE:2644617	whole body	3' read
AW566530.1		fin	5' read	P
AW566687.1		fin	5' read	P
BF156756.1	Clone IMAGE:3817790	whole body	5' read	P
BG303491.1	Clone IMAGE:3817790	whole body	3' read	A
BM187181.1	Clone IMAGE:5546520	fin	5' read	A
BI708824.1	Clone IMAGE:5072121	fin	5' read	A
CA470592.1	Clone IMAGE:6790174	whole body	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria