Pectate lyase family protein (AT5G55720)

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Finding cDNAs

UGID:14512 UniGene At.29429 Arabidopsis thaliana (thale cress) AT5G55720

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Pectate lyase family protein (AT5G55720)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_200383.1	pectate lyase family protein	A. thaliana	100.0	391

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

cDNA Sources:

mixed; inflorescence; whole plant

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (2)

	NM_124954.2	Arabidopsis thaliana pectate lyase family protein (AT5G55720) mRNA, complete cds	P
	BX832928.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL23ZC11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	P

EST sequences (10 of 19) [Show all sequences]

CB260541.1	Clone MPIZp769I233Q	whole plant	5' read	PA
CF774028.1	Clone 26C09	inflorescence		P
CF774201.1	Clone 29A05	inflorescence		P
DR267684.1	Clone 147598	mixed	5' read	P
DR267685.1	Clone 125339	mixed	5' read	P
DR267686.1	Clone 111616	mixed	5' read	P
DR267687.1	Clone 6502	mixed	5' read	P
DR267688.1	Clone 32108	mixed	5' read	P
DR267689.1	Clone 121366	mixed	5' read	P
DR267690.1	Clone 42826	mixed	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria