Glycoside hydrolase family 47 protein (AT1G30000)

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UGID:11949 UniGene At.26476 Arabidopsis thaliana (thale cress) AT1G30000

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Glycoside hydrolase family 47 protein (AT1G30000)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_564345.1	glycoside hydrolase family 47 protein	A. thaliana	100.0	623
NP_001087467.1	MGC78858 protein	X. laevis	54.0	448
NP_001093449.1	alpha 1,2-mannosidase	D. rerio	48.1	447
NP_501577.1	hypothetical protein ZC410.3	C. elegans	47.4	449
NP_057303.2	alpha 1,2-mannosidase	H. sapiens	47.1	480
NP_001025154.1	mannosidase, alpha, class 1B, member 1	M. musculus	46.8	447
NP_651667.1	CG11874	D. melanogaster	45.5	446
XP_329966.1	hypothetical protein	N. crassa	45.0	520

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	cDNA Sources:	whole plant; mixed; flower

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (4)

AY054482.1	Arabidopsis thaliana endoplasmic reticulum alpha-mannosidase, putative (At1g30000; T1P2.10) mRNA, complete cds	P
NM_102740.2	Arabidopsis thaliana glycoside hydrolase family 47 protein (AT1G30000) mRNA, complete cds	PA
AY093280.1	Arabidopsis thaliana endoplasmic reticulum alpha-mannosidase, putative (At1g30000) mRNA, complete cds	P
BX814722.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	PA

EST sequences (10 of 19) [Show all sequences]

AV792228.1	Clone RAFL07-14-A20	whole plant	3' read	P
AV793844.1	Clone RAFL08-10-H15	whole plant	3' read
AV800760.1	Clone RAFL09-25-G14	whole plant	3' read
AV807561.1	Clone RAFL09-51-A04	whole plant	3' read
AV808137.1	Clone RAFL09-53-G23	whole plant	3' read	P
AV808212.1	Clone RAFL09-53-L09	whole plant	3' read
AV825749.1	Clone RAFL07-14-A20	whole plant	5' read	P
AV826166.1	Clone RAFL08-10-H15	whole plant	5' read	P
BP788988.1	Clone RAFL07-36-G12	whole plant	3' read
EH841052.1		mixed

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria