Glycoside hydrolase family 47 protein (AT1G27520)

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UGID:10610 UniGene At.24198 Arabidopsis thaliana (thale cress) AT1G27520

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Glycoside hydrolase family 47 protein (AT1G27520)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_564288.1	glycoside hydrolase family 47 protein	A. thaliana	100.0	573
XP_696207.3	PREDICTED: ER degradation enhancer, mannosidase alpha-like 2	D. rerio	45.4	405
NP_055489.1	ER degradation enhancer, mannosidase alpha-like 1	H. sapiens	45.2	513
NP_001091440.1	hypothetical protein LOC100049149	X. laevis	45.0	495

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	whole plant; unspecified tissue; mixed; flower

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

AY056382.1	Arabidopsis thaliana At1g27520/T17H3_2 mRNA, complete cds	P
NM_102516.3	Arabidopsis thaliana glycoside hydrolase family 47 protein (AT1G27520) mRNA, complete cds	P
AY090979.1	Arabidopsis thaliana At1g27520 mRNA sequence	PA
BX815166.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS39ZG12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	P
BX815145.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	P
BX815269.1	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS48ZD12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	P

EST sequences (10 of 21) [Show all sequences]

AA394707.1	Clone 157I7XP	mixed	3' read
R84145.1	Clone 157I7T7	mixed		P
AI993477.1	Clone 701496436	unspecified tissue		P
AI993496.1	Clone 701496483	unspecified tissue		P
AV802556.1	Clone RAFL09-32-F20	whole plant	3' read	P
AV808614.1	Clone RAFL09-55-J10	whole plant	3' read
AV828715.1	Clone RAFL09-32-F20	whole plant	5' read
BP562147.1	Clone RAFL09-55-J10	whole plant	5' read	P
BP662064.1	Clone RAFL21-10-D06	unspecified tissue	3' read	P
BP663534.1	Clone RAFL21-48-I05	unspecified tissue	3' read

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria