Glycoside hydrolase family 47 protein (AT5G43710)

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UGID:10436 UniGene At.23954 Arabidopsis thaliana (thale cress) AT5G43710

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Glycoside hydrolase family 47 protein (AT5G43710)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_199184.1	glycoside hydrolase family 47 protein	A. thaliana	100.0	623
NP_663512.1	putative alpha-mannosidase	M. musculus	47.0	470
NP_001091440.1	hypothetical protein LOC100049149	X. laevis	46.7	499
NP_060687.2	ER degradation enhancer, mannosidase alpha-like 2 isoform 1	H. sapiens	46.0	485
XP_696207.3	PREDICTED: ER degradation enhancer, mannosidase alpha-like 2	D. rerio	45.0	413

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

	EST Profile:	Approximate expression patterns inferred from EST sources.
	GEO profiles:	Experimental gene expression data (Gene Expression Omnibus).
	cDNA Sources:	seed; mixed; unspecified tissue; whole plant; flower

MAPPING POSITION

Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.

Chromosome:

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

AF370128.1	Arabidopsis thaliana unknown protein (At5g43710) mRNA, complete cds	PA
AY040044.1	Arabidopsis thaliana unknown protein (At5g43710) mRNA, complete cds	P
NM_123737.2	Arabidopsis thaliana glycoside hydrolase family 47 protein (AT5G43710) mRNA, complete cds	P

EST sequences (10 of 16) [Show all sequences]

AV441426.1	Clone APZ54g09_f	mixed	3' read	P
H35972.1	Clone 172D3T7	mixed		P
AI993863.1	Clone 701515220	unspecified tissue		P
AV798754.1	Clone RAFL09-17-G20	whole plant	3' read	P
AV827599.1	Clone RAFL09-17-G20	whole plant	5' read	P
BP622365.1	Clone RAFL17-02-P19	unspecified tissue	3' read	P
CB253059.1	Clone MPIZp768M101Q	seed	5' read	P
CB253060.1	Clone MPIZp768M101Q	seed	3' read	PA
CB253088.1	Clone MPIZp768B038Q	seed	5' read	P
CB255309.1	Clone MPIZp768J115Q	seed	5' read	P

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria