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Sus scrofa: UniGene Build #42

Lineage: cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus; Sus scrofa

Sequences Included in UniGene
Known genes are from GenBank 19 Jun 2012
ESTs are from dbEST through 19 Jun 2012

11,264 mRNAs
3,405 Models
30,551 HTC
142,542 EST, 3'reads
989,103 EST, 5'reads
117,920 EST, other/unknown

1,294,785 total sequences in clusters

Build Method: Genome Based

Alignments between transcript sequences and genomic sequences are used to generate clusters of sequences originating from the same gene.
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Final Number of Clusters (sets)

50,106 sets total
5,664 sets contain at least one mRNA
14,270 sets contain at least one HTC sequence
48,269 sets contain at least one EST
5,301 sets contain both mRNAs and ESTs



Histogram of cluster sizes for UniGene Ssc build 42
Cluster size Number of clusters

8193-16384 2
4097-8192 9
2049-4096 26
1025-2048 90
513-1024 161
257-512 342
129-256 981
65-128 2283
33-64 3709
17-32 4459
9-16 4824
5-8 5002
3-4 4759
2 4444
1 19015




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