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Oryzias latipes: UniGene Build #26

Lineage: cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Neognathi; Neoteleostei; Eurypterygii; Ctenosquamata; Acanthomorpha; Euacanthomorpha; Holacanthopterygii; Acanthopterygii; Euacanthopterygii; Percomorpha; Smegmamorpha; Atherinomorpha; Beloniformes; Adrianichthyoidei; Adrianichthyidae; Oryziinae; Oryzias; Oryzias latipes

Sequences Included in UniGene
Known genes are from GenBank 14 Apr 2009
ESTs are from dbEST through 14 Apr 2009

1,197 mRNAs
0 Models
8 HTC
234,513 EST, 3'reads
239,815 EST, 5'reads
109,188 EST, other/unknown

584,721 total sequences in clusters

Build Method: Transcript Based

Alignments between all transcript sequences are used to generate clusters of sequences originating from the same gene.
More...


Final Number of Clusters (sets)

22,239 sets total
721 sets contain at least one mRNA
8 sets contain at least one HTC sequence
22,074 sets contain at least one EST
564 sets contain both mRNAs and ESTs



Histogram of cluster sizes for UniGene Ola build 26
4097-8192 3
2049-4096 16
1025-2048 51
513-1024 106
257-512 113
129-256 293
65-128 691
33-64 1374
17-32 2605
9-16 3789
5-8 4792
3-4 5376
2 1827
1 1203
Japanese medaka (Oryzias latipes), along with other teleost fishes such as zebrafish, has been used since the late 1800s as a model system for vertebrate development.

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