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Sequence Set Browser

 

NZ_AAAL00000000.2 Xylella fastidiosa Dixon

Master
# of Scaffolds: 32
BioProject: PRJNA224116
BioSample: SAMN02441075
Assembly: GCF_000166835.1
Keywords: WGS
Annotation: Scaffolds
Organism: Xylella fastidiosa Dixonshow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = Dixon
WGS: AAAL02000001:AAAL02000032
Scaffolds: NZ_AAAL02000001:NZ_AAAL02000032
32 scaffolds, 2,255 proteins, total length is 2,622,328 bases
Reference:
Sequencing of the draft genome and assembly of Xylella fastidiosa Dixon : Unpublished – show 11 authorshide authors
Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Richardson,P., US DOE Joint Genome Institute (JGI-PGF)
Reference:
Annotation of the draft genome assembly of Xylella fastidiosa Dixon : Unpublished – Larimer,F., Land,M., US DOE Joint Genome Institute (JGI-ORNL)
Submission:
Submitted (08-JUL-2002) Production Genomics Facility, DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA – DOE Joint Genome Institute
Submission:
Submitted (19-JUL-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA – show 11 authorshide authors
Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Richardson,P., US DOE Joint Genome Institute (JGI-PGF)

On Jul 27, 2005 this sequence version replaced gi:22995929.

The Xylella fastidiosa Dixon whole genome shotgun (WGS) project has the project accession NZ_AAAL00000000. This version of the project (02) has the accession number NZ_AAAL02000000, and consists of sequences AAAL02000001-AAAL02000032.

URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Sandy Purcell (purcell@nature.berkeley.edu) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL Contact: Paul Richardson (microbes@cuba.jgi-psf.org).

##Genome-Annotation-Data-START##
Annotation Provider : NCBI
Annotation Date : 08/12/2015 19:43:24
Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method : Best-placed reference protein set; GeneMarkS+
Annotation Software revision : 3.0
Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes : 2,382
CDS : 2,255
Pseudo Genes : 74
rRNAs : 1, 1, 1 ( 5S, 16S, 23S )
complete rRNAs : 1, 1, 1 ( 5S, 16S, 23S )
partial rRNAs :
tRNAs : 49
ncRNA : 1
Frameshifted Genes : 32
Frameshifted Genes On Monomer Runs : 3
Frameshifted Genes Not On Monomer Runs : 4
##Genome-Annotation-Data-END##