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Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

 

JLPT00000000.1 Mycobacterium tuberculosis UT0038

Master
# of Contigs: 15
# of Proteins: 3,989
# of Scaffolds: 8
Total length: 4,391,865 bp
BioProject: PRJNA223554
BioSample: SAMN02380999
Keywords: WGS
Annotation: Contigs
Organism: Mycobacterium tuberculosis UT0038show lineagehide lineage
Biosource:
/country = Uganda
/host = Homo sapiens
/isolation_source = Sputum
/mol_type = genomic
/strain = UT0038
WGS: JLPT01000001:JLPT01000015
Scaffolds: KK339608:KK339615
8 scaffolds, total length is 4,409,765 bases
Reference:
The Genome Sequence of Mycobacterium tuberculosis UT0038 : Unpublished – show 37 authorshide authors
Earl,A.M., Alland,D., Armstrong,D., Kyobe,S., Weir,S., Ssengooba,W., Lee,J.S., Dorman,S., Desjardins,C., Abeel,T., Young,S., Zeng,Q., Gargeya,S., Abouelleil,A., Alvarado,L., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., Murphy,C., Naylor,J., Pearson,M., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genomics Platform, The Broad Institute Genome Sequencing Center for Infectious Disease
Submission:
Submitted (08-APR-2014) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 37 authorshide authors
Earl,A.M., Alland,D., Armstrong,D., Kyobe,S., Weir,S., Ssengooba,W., Lee,J.S., Dorman,S., Desjardins,C., Abeel,T., Young,S., Zeng,Q., Gargeya,S., Abouelleil,A., Alvarado,L., Chapman,S.B., Gainer-Dewar,J., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J., Murphy,C., Naylor,J., Pearson,M., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genomics Platform, The Broad Institute Genome Sequencing Center for Infectious Disease

The Mycobacterium tuberculosis UT0038 whole genome shotgun (WGS) project has the project accession JLPT00000000. This version of the project (01) has the accession number JLPT01000000, and consists of sequences JLPT01000001-JLPT01000015.

Please be aware that the annotation is done automatically with little or no manual curation.

##Genome-Assembly-Data-START##
Assembly Method : allpaths v. R48105
Assembly Name : Myco_tube_UT0038_V1
Genome Coverage : 114.0x
Sequencing Technology : Illumina
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:JLPT01.1.gbff.gz 2.8 Mb
FASTA:JLPT01.1.fsa_nt.gz 1.3 Mb
ASN.1:JLPT01.1.bbs.gz 2.1 Mb