Sign in to NCBI
skip to main content

Sequence Set Browser


GAAD00000000.1 Misgurnus anguillicaudatus

# of Contigs: 11,327
# of Proteins: 0
Total length: 9,924,963 bp
BioProject: PRJNA173219
BioSample: SAMN01121008
Sequence Read Archive: SRR550147, SRR550148, SRR550149
Keywords: TSA
Organism: Misgurnus anguillicaudatusshow lineagehide lineage
/dev_stage = adult
/mol_type = mRNA
/tissue_type = skin
WGS: GAAD01000001:GAAD01011327
Submitted (03-SEP-2012) Environmental Genomics Group, Institute of Hydrobiology, Chinese Academy of Sciences, NO. 7 Donghu South Road, Wuhan, Huber 430072, PR China – Long,Y., Li,Q., Zhou,B., Song,G., Cui,Z.

Total RNA samples extracted from the skin of mud loach (Misgurnus anguillicaudatus) were used to construct sequencing library. Short sequencing reads generated by Illumina GAIIx platform were assembled using Oases with multiple kmer values namely, 19, 21, 23, 25, 27, 29 and 31. The sequence redundancy was reduced with TGICL clustering.

Assembly Method : oases v. 0.2.08
Assembly Name : Mud loach skin transcriptome
Coverage : 158 fold
Sequencing Technology : Illumina
GenBank:GAAD01.1.gbff.gz 4.6 Mb
FASTA:GAAD01.1.fsa_nt.gz 2.9 Mb
ASN.1:GAAD01.1.bbs.gz 2.6 Mb