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GAAD00000000.1 Misgurnus anguillicaudatus
# of Contigs: 11,327 # of Proteins: 0 Total length: 9,924,963 bp BioProject: PRJNA173219 BioSample: SAMN01121008 Sequence Read Archive: SRR550147, SRR550148, SRR550149 Keywords: TSA Organism: Misgurnus anguillicaudatus – show lineagehide lineage Biosource:/dev_stage = adult/mol_type = mRNA/tissue_type = skin WGS: GAAD01000001:GAAD01011327 Reference:De Novo Assembly of Mud Loach (Misgurnus anguillicaudatus) Skin Transcriptome to Identify Putative Genes Involved in Immunity and Epidermal Mucus Secretion : PLoS ONE 8 (2), E56998 (2013) – show 6 authorshide authorsLong,Y., Li,Q., Zhou,B., Song,G., Li,T., Cui,Z. Submission:Submitted (03-SEP-2012) Environmental Genomics Group, Institute of Hydrobiology, Chinese Academy of Sciences, NO. 7 Donghu South Road, Wuhan, Huber 430072, PR China – Long,Y., Li,Q., Zhou,B., Song,G., Cui,Z.
Total RNA samples extracted from the skin of mud loach (Misgurnus anguillicaudatus) were used to construct sequencing library. Short sequencing reads generated by Illumina GAIIx platform were assembled using Oases with multiple kmer values namely, 19, 21, 23, 25, 27, 29 and 31. The sequence redundancy was reduced with TGICL clustering.
##Assembly-Data-START## Assembly Method : oases v. 0.2.08 Assembly Name : Mud loach skin transcriptome Coverage : 158 fold Sequencing Technology : Illumina ##Assembly-Data-END##