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Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

 

CABN00000000.1 mine drainage metagenome

Master
# of Contigs: 161
# of Proteins: 1,348
# of Scaffolds: 6
Total length: 1,407,831 bp
BioProject: PRJNA38045
BioSample: SAMEA3146313
Keywords: WGS
Annotation: Contigs
Organism: mine drainage metagenomeshow lineagehide lineage
Biosource:
/collection_date = 21-May-2007
/country = France:Carnoules
/environmental_sample
/isolation_source = Carnoules arsenic-contaminated mine drainage
/lat_lon = 44.12 N 4 E
/metagenomic
/mol_type = genomic
/note = Carnoules bin 3
WGS: CABN01000001:CABN01000161
Scaffolds: FN597437:FN597442
6 scaffolds, total length is 1,423,331 bases
Reference:
Diversity of trophic interactions inside an arsenic-rich microbial ecosystem : Unpublished – show 29 authorshide authors
Bertin,P.N., Heinrich-Salmeron,A., Pelletier,E., Goulhen-Chollet,F., Arsene-Ploetze,F., Gallien,S., Calteau,A., Vallenet,D., Casiot,C., Chane-Woon-Ming,B., Giloteaux,L., Barakat,M., Bonnefoy,V., Bruneel,O., Chandler,M., Cleiss,J., Duran,R., Elbaz-Poulichet,F., Fonknechten,N., Lauga,B., Mornico,D., Ortet,P., Schaeffer,C., Siguier,P., Alexander Thil Smith,A., Van Dorsselaer,A., Weissenbach,J., Medigue,C., Le Paslier,D.
Submission:
Submitted (16-OCT-2009) Pelletier E., CEA / Genoscope, CP 5706, 91057 Evry cedex, N/A, FRANCE – Pelletier,E.

The mine drainage metagenome whole genome shotgun (WGS) project has the project accession CABN00000000. This version of the project (01) has the accession number CABN01000000, and consists of sequences CABN01000001-CABN01000161.

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM, PsortB and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MaGe annotation system http://www.genoscope.cns.fr/agc/mage.

Contigs
Proteins
Download
GenBank:CABN01.1.gbff.gz 1 Mb
FASTA:CABN01.1.fsa_nt.gz 428.7 kb
ASN.1:CABN01.1.bbs.gz 768.8 kb