Sequence Set BrowserShow helpHide help
BACJ00000000.1 Oryza sativa Japonica Group
# of Contigs: 64,745 # of Proteins: 0 # of Scaffolds: 12 Total length: 364,194,486 bp BioProject: PRJDA67163 BioSample: SAMD00036555 Keywords: WGS Organism: Oryza sativa Japonica Group – show lineagehide lineage Biosource:/cultivar = Hitomebore/mol_type = genomic WGS: BACJ01000001:BACJ01064745 Scaffolds: DG000053:DG00006412 scaffolds, total length is 382,626,607 bases Reference:QTL-seq: The rapid isolation of rice genes by whole genome sequencing : Unpublished – show 13 authorshide authorsAbe,A., Kosugi,S., Yoshida,K., Natsume,S., Takagi,H., Kanzaki,H., Matsumura,H., Yoshida,K., Matsuoka,C., Tamiru,M., Innan,H., Kamoun,S., Terauchi,R. Submission:Submitted (01-JUN-2011) Contact:Ryohei Terauchi Iwate Biotechnology Research Center; 22-174-4 Narita, Kitakami, Iwate 024-0003, Japan – Terauchi,R., Yoshida,K., Kosugi,S.
The Oryza sativa Japonica Group whole genome shotgun (WGS) project has the project accession BACJ00000000. This version of the project (01) has the accession number BACJ01000000, and consists of sequences BACJ01000001-BACJ01064745.
Paired-end 75 bp reads were mapped to Oryza sativa cv. 'Nipponbare' reference genome (IRGSP build 5). The genomic regions covered with at least two reads were called as contigs. SNPs but not indels have been reflected to the consensus contigs.
##Genome-Assembly-Data-START## Finishing Goal : Noncontiguous Finished Current Finishing Status : Noncontiguous Finished Assembly Method : MAQ v. 0.7.1 Assembly Name : Osat_hitom_01 Genome Coverage : 179X Sequencing Technology : Illumina (Solexa) GA IIx ##Genome-Assembly-Data-END##