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Sequence Set Browser


BACJ00000000.1 Oryza sativa Japonica Group

# of Contigs: 64,745
# of Proteins: 0
# of Scaffolds: 12
Total length: 364,194,486 bp
BioProject: PRJDA67163
BioSample: SAMD00036555
Keywords: WGS
Organism: Oryza sativa Japonica Groupshow lineagehide lineage
/cultivar = Hitomebore
/mol_type = genomic
WGS: BACJ01000001:BACJ01064745
Scaffolds: DG000053:DG000064
12 scaffolds, total length is 382,626,607 bases
QTL-seq: The rapid isolation of rice genes by whole genome sequencing : Unpublished – show 13 authorshide authors
Abe,A., Kosugi,S., Yoshida,K., Natsume,S., Takagi,H., Kanzaki,H., Matsumura,H., Yoshida,K., Matsuoka,C., Tamiru,M., Innan,H., Kamoun,S., Terauchi,R.
Submitted (01-JUN-2011) Contact:Ryohei Terauchi Iwate Biotechnology Research Center; 22-174-4 Narita, Kitakami, Iwate 024-0003, Japan – Terauchi,R., Yoshida,K., Kosugi,S.

The Oryza sativa Japonica Group whole genome shotgun (WGS) project has the project accession BACJ00000000. This version of the project (01) has the accession number BACJ01000000, and consists of sequences BACJ01000001-BACJ01064745.

Paired-end 75 bp reads were mapped to Oryza sativa cv. 'Nipponbare' reference genome (IRGSP build 5). The genomic regions covered with at least two reads were called as contigs. SNPs but not indels have been reflected to the consensus contigs.

Finishing Goal : Noncontiguous Finished
Current Finishing Status : Noncontiguous Finished
Assembly Method : MAQ v. 0.7.1
Assembly Name : Osat_hitom_01
Genome Coverage : 179X
Sequencing Technology : Illumina (Solexa) GA IIx
GenBank:BACJ01.1.gbff.gz 157.6 Mb
FASTA:BACJ01.1.fsa_nt.gz 107.2 Mb
ASN.1:BACJ01.1.bbs.gz 87.9 Mb