The Escherichia coli 908675 whole genome shotgun (WGS) project has the project accession AXTY00000000. This version of the project (01) has the accession number AXTY01000000, and consists of sequences AXTY01000001-AXTY01000239.
Bacteria provided by David Creely and William Dunne (BioMerieux, Inc., 595 Anglum Road, Hazelwood, MO 63042).
Coding sequences were predicted using GeneMark and Glimmer3. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE and non-coding RNA genes by RNAmmer and Rfam. The final gene set is processed through several programs such as Kegg, psortB and Interproscan to determine possible function. Gene product names are determined by BER. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.
This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. This work was funded by the National Human Genome Research Institute (NHGRI)/National Institutes of Health (NIH) grant 5U54HG00496804 for characterization of this genome.
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