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Sequence Set Browser

 

AXAY00000000.1 Bradyrhizobium sp. WSM3983

Master
# of Contigs: 73
# of Proteins: 0
# of Scaffolds: 3
Total length: 8,785,447 bp
BioProject: PRJNA162993
BioSample: SAMN02440715
Keywords: WGS
Organism: Bradyrhizobium sp. WSM3983show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = WSM3983
WGS: AXAY01000001:AXAY01000073
Scaffolds: KI421489:KI421491
3 scaffolds, total length is 509,685 bases
Submission:
Submitted (23-AUG-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 16 authorshide authors
Kyrpides,N., Huntemann,M., Han,J., Chen,A., Mavromatis,K., Markowitz,V., Palaniappan,K., Ivanova,N., Schaumberg,A., Pati,A., Liolios,K., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T., DOE Joint Genome Institute

The Bradyrhizobium sp. WSM3983 whole genome shotgun (WGS) project has the project accession AXAY00000000. This version of the project (01) has the accession number AXAY01000000, and consists of sequences AXAY01000001-AXAY01000073.

URL -- http://www.jgi.doe.gov JGI Project ID: 404551 Source DNA and Organism available from Wayne Reeve (W.Reeve@murdoch.edu.au) Contacts: Nikos Kyrpides (NCKyrpides@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Full annotations are available from IMG.

##MIGS-Data-START##
assembly : ALLPATHS v. R37654
country : Australia
environment : Host; Plant root; Root nodule; Soil
investigation_type : bacteria_archaea
lat_lon : -13.335 132.439
project_name : Bradyrhizobium sp. WSM3983
sequencing_meth : WGS
biotic_relationship : Symbiotic
rel_to_oxygen : Aerobe
finishing_strategy : Level 1: Standard Draft
GOLD Stamp ID : Gi08871
Type Strain : No
Funding Program : DOE-DD 2010
Isolation Site : Kakadu National Park
Host Name : Kennedia coccinea
Cell Shape : Rod-shaped
Motility : Motile
Sporulation : Nonsporulating
Temperature Range : Mesophile
Temperature Optimum : 28
pH : 5-8
Gram Staining : Gram-
Symbiotic Relationship : Mutualistic
Diseases : None
Phenotypes : Non-Pathogen
##MIGS-Data-END##
##Genome-Assembly-Data-START##
Finishing Goal : Improved High-Quality Draft
Current Finishing Status : Improved High-Quality Draft
Assembly Method : ALLPATHS v. R37654
Genome Coverage : Unknown
Sequencing Technology : 454-GS-FLX-Titanium; Illumina
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AXAY01.1.gbff.gz 3.6 Mb
FASTA:AXAY01.1.fsa_nt.gz 2.6 Mb
ASN.1:AXAY01.1.bbs.gz 2 Mb