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Sequence Set Browser

 

ANCC00000000.1 Trachipleistophora hominis

Master
# of Contigs: 1,632
# of Proteins: 3,212
# of Scaffolds: 310
Total length: 7,706,555 bp
BioProject: PRJNA84343
BioSample: SAMN02981473
Keywords: WGS
Annotation: Scaffolds
Organism: Trachipleistophora hominisshow lineagehide lineage
Biosource:
/collection_date = 1996
/host = Homo sapiens
/isolation_source = skeletal muscle of a patient with HIV/AIDS suffering from a severe inflammation of muscle tissue
/mol_type = genomic
/note = unnamed strain that was published by Hollister WS et. al (1996) Parasitology 112:143-154 (PMID 8587798) and obtained in 2001 from original authors
WGS: ANCC01000001:ANCC01001632
Scaffolds: JH993798:JH994107
310 scaffolds, 3,212 proteins, total length is 8,498,182 bases
Reference:
The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution : PLoS Pathog. 8 (10), E1002979 (2012) – show 19 authorshide authors
Heinz,E., Williams,T.A., Nakjang,S., Noel,C.J., Swan,D.C., Goldberg,A.V., Harris,S.R., Weinmaier,T., Markert,S., Becher,D., Bernhardt,J., Dagan,T., Hacker,C., Lucocq,J.M., Schweder,T., Rattei,T., Hall,N., Hirt,R.P., Embley,T.M.
Submission:
Submitted (11-MAY-2012) Institute of Cell and Molecular Bioscience, Framlington Place, Newcastle Upon Tyne, UK – show 16 authorshide authors
Heinz,E., Williams,T.A., Nakjang,S., Noel,C.J., Swan,D.C., Goldberg,A.V., Harris,S.R., Weinmaier,T., Markert,S., Becher,D., Dagan,T., Schweder,T., Rattei,T., Hall,N., Hirt,R.P., Embley,T.M.

The Trachipleistophora hominis whole genome shotgun (WGS) project has the project accession ANCC00000000. This version of the project (01) has the accession number ANCC01000000, and consists of sequences ANCC01000001-ANCC01001632.

##Genome-Assembly-Data-START##
Assembly Method : Newbler v. 2011
Genome Coverage : 32.5x
Sequencing Technology : 454; SOLiD
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:ANCC01.1.gbff.gz 3.3 Mb
FASTA:ANCC01.1.fsa_nt.gz 2.3 Mb
ASN.1:ANCC01.1.bbs.gz 1.8 Mb