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Sequence Set Browser

 

AMQN00000000.1 Capitella teleta

Master
# of Contigs: 49,393
# of Proteins: 31,978
# of Scaffolds: 20,803
Total length: 276,663,671 bp
BioProject: PRJNA175705
BioSample: SAMN02769627
Keywords: WGS
Annotation: Scaffolds
Organism: Capitella teletashow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = I ESC-2004
WGS: AMQN01000001:AMQN01049393
Scaffolds: KB291798:KB312600
20,803 scaffolds, 31,978 proteins, total length is 333,283,208 bases
Reference:
Insights into bilaterian evolution from three spiralian genomes : Nature 493 (7433), 526-531 (2013) – show 26 authorshide authors
Simakov,O., Marletaz,F., Cho,S.J., Edsinger-Gonzales,E., Havlak,P., Hellsten,U., Kuo,D.H., Larsson,T., Lv,J., Arendt,D., Savage,R., Osoegawa,K., de Jong,P., Grimwood,J., Chapman,J.A., Shapiro,H., Aerts,A., Otillar,R.P., Terry,A.Y., Boore,J.L., Grigoriev,I.V., Lindberg,D.R., Seaver,E.C., Weisblat,D.A., Putnam,N.H., Rokhsar,D.S.
Submission:
Submitted (19-DEC-2012) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 27 authorshide authors
Hellsten,U., Grimwood,J., Chapman,J.A., Shapiro,H., Aerts,A., Otillar,R.P., Terry,A.Y., Boore,J.L., Simakov,O., Marletaz,F., Cho,S.-J., Edsinger-Gonzales,E., Havlak,P., Kuo,D.-H., Larsson,T., Lv,J., Arendt,D., Savage,R., Osoegawa,K., de Jong,P., Lindberg,D.R., Seaver,E.C., Weisblat,D.A., Putnam,N.H., Grigoriev,I.V., Rokhsar,D.S., DOE Joint Genome Institute

The Capitella teleta whole genome shotgun (WGS) project has the project accession AMQN00000000. This version of the project (01) has the accession number AMQN01000000, and consists of sequences AMQN01000001-AMQN01049393.

URL -- http://genome.jgi.doe.gov/Capca1 JGI Project ID: 16637 The DNA was provided by Daniel Rokshar(dsrokhsar@lbl.gov) The strain is available from Daniel Rokshar Contacts: Daniel Rokshar (dsrokhsar@lbl.gov) Igor Grigoriev (ivgrigoriev@lbl.gov) Assembly and annotation done by JGI. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).

##Genome-Assembly-Data-START##
Assembly Method : JGI Jazz Assembler v. 10/16/2006
Assembly Name : Capca1
Genome Coverage : 7.9x
Sequencing Technology : Sanger
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AMQN01.1.gbff.gz 120.7 Mb
FASTA:AMQN01.1.fsa_nt.gz 81.8 Mb
ASN.1:AMQN01.1.bbs.gz 66.3 Mb