The Enterococcus faecium ERV102 whole genome shotgun (WGS) project has the project accession AMAX00000000. This version of the project (01) has the accession number AMAX01000000, and consists of sequences AMAX01000001-AMAX01000263.
Enterococcus faecium ERV102 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the oral cavity.
This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Bacteria and source DNA were provided by Cesar A. Arias, MD, MSc, PhD (Associate Professor of Medicine, Division of Infectious Diseases, Director, Laboratory for Antimicrobial Research, University of Texas Medical School at Houston, MSB 2.112, 6431 Fannin, Houston, TX 77030, USA). Funded by Independent Investigator Initiated Research Grant by Pfizer Inc, 2010.
Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56), psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.
The National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH) is funding the sequence characterization of the Enterococcus faecium ERV102 genome.
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