The Alligator mississippiensis whole genome shotgun (WGS) project has the project accession AKHW00000000. This version of the project (01) has the accession number AKHW01000000, and consists of sequences AKHW01000001-AKHW01114158.
BAC-end scaffolding was done with BWA v. 0.6.1-r112-master, samtools v. 0.1.18-dev (r982:313), and SGA v. 0.9.19. Assembled transcripts were also used to scaffold the genome with blat v. 34x12, pslReps filtering and SGA v. 0.9.19.
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