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Sequence Set Browser

 

ACDR00000000.2 Bacteroides sp. 4_3_47FAA

Master
# of Contigs: 170
# of Proteins: 4,706
# of Scaffolds: 39
Total length: 5,429,825 bp
BioProject: PRJNA32443
BioSample: SAMN02463694
Keywords: WGS
Annotation: Contigs
Organism: Bacteroides sp. 4_3_47FAAshow lineagehide lineage
Biosource:
/host = Homo sapiens
/isolation_source = gastrointestinal tract
/mol_type = genomic
/strain = 4_3_47FAA
WGS: ACDR02000001:ACDR02000170
Scaffolds: JH114352:JH114390
39 scaffolds, total length is 5,442,925 bases
Reference:
The Genome Sequence of Bacteroides sp. 4_3_47FAA : Unpublished – show 48 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Ambrose,C.E., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (03-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 43 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Ambrose,C., Lander,E., Nusbaum,C., Ilzarbe,M., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (13-MAY-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 48 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Ambrose,C.E., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform

On Sep 2, 2011 this sequence version replaced gi:223713177.

The Bacteroides sp. 4_3_47FAA whole genome shotgun (WGS) project has the project accession ACDR00000000. This version of the project (02) has the accession number ACDR02000000, and consists of sequences ACDR02000001-ACDR02000170.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA and bacteria provided by Strauss, J.C., Ambrose, C.E., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal.

Product names were updated in June 2013.

##Genome-Assembly-Data-START##
Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : Newbler v. 2.1-PreRelease-4/28/2009
Assembly Name : Bacteroides_sp_4_3_47FAA_V2
Genome Coverage : 17x
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:ACDR02.1.gbff.gz 3.7 Mb
FASTA:ACDR02.1.fsa_nt.gz 1.6 Mb
ASN.1:ACDR02.1.bbs.gz 2.8 Mb