On Sep 29, 2009 this sequence version replaced gi:209947920.
The Providencia rustigianii DSM 4541 whole genome shotgun (WGS) project has the project accession ABXV00000000. This version of the project (02) has the accession number ABXV02000000, and consists of sequences ABXV02000001-ABXV02000163.
Providencia rustigianii (GenBank Accession Number for 16S rDNA gene: AM040489) is a member of the Proteobacteria division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 4541).
We have performed one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible.
Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.
This work was supported by the National Human Genome Research Institute and the NIH Roadmap Human Microbiome Project [http://nihroadmap.nih.gov/hmp/].
This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Genome Coverage: 19.8x
Sequencing Technology: 454
Annotation was added to the contigs in December 2009.
Product names were updated in June 2013.
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