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Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)


ABOK00000000.1 mosquito metagenome

# of Contigs: 657,204
# of Proteins: 0
Total length: 65,895,997 bp
BioProject: PRJNA28467
BioSample: SAMN02954242
Keywords: WGS
Organism: mosquito metagenomeshow lineagehide lineage
/clone_lib = MosqDigSDVir060606
/collection_date = 06-Jun-2006
/host = mosquito
/isolation_source = viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
/lat_lon = 33.462524 N 117.080650 W
/mol_type = genomic genomic
WGS: ABOK01000001:ABOK01657204
Functional metagenomic profiling of nine biomes : Nature 452 (7187), 629-632 (2008) – show 25 authorshide authors
Dinsdale,E.A., Edwards,R.A., Hall,D., Angly,F., Breitbart,M., Brulc,J.M., Furlan,M., Desnues,C., Haynes,M., Li,L., McDaniel,L., Moran,M.A., Nelson,K.E., Nilsson,C., Olson,R., Paul,J., Brito,B.R., Ruan,Y., Swan,B.K., Stevens,R., Valentine,D.L., Thurber,R.V., Wegley,L., White,B.A., Rohwer,F.
Submitted (04-APR-2008) SDSU Center for Universal Microbial Sequencing, 5500 Campanile Dr., San Diego, CA 92182, USA – Edwards,R.A., Rohwer,F., Angly,F.

The mosquito metagenome whole genome shotgun (WGS) project has the project accession ABOK00000000. This version of the project (01) has the accession number ABOK01000000, and consists of sequences ABOK01000001-ABOK01657204.

GenBank:ABOK01.1.gbff.gz 24.5 Mb
 ABOK01.2.gbff.gz 22.8 Mb
 ABOK01.3.gbff.gz 1.1 Mb
FASTA:ABOK01.1.fsa_nt.gz 12.1 Mb
 ABOK01.2.fsa_nt.gz 11.2 Mb
 ABOK01.3.fsa_nt.gz 439.6 kb
ASN.1:ABOK01.1.bbs.gz 14.3 Mb
 ABOK01.2.bbs.gz 13 Mb
 ABOK01.3.bbs.gz 676.9 kb