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Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

 

ABEU00000000.1 Physcomitrella patens

Master
# of Contigs: 19,135
# of Proteins: 35,940
# of Scaffolds: 2,106
Total length: 453,929,394 bp
BioProject: PRJNA13064
BioSample: SAMN00120126
Keywords: WGS
Annotation: Scaffolds
Organism: Physcomitrella patensshow lineagehide lineage
Biosource:
/ecotype = Gransden 2004
/mol_type = genomic
WGS: ABEU01000001:ABEU01019135
Scaffolds: DS544890:DS546995
2,106 scaffolds, 35,940 proteins, total length is 479,985,347 bases
Reference:
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants : Science 319 (5859), 64-69 (2008) – show 70 authorshide authors
Rensing,S.A., Lang,D., Zimmer,A.D., Terry,A., Salamov,A., Shapiro,H., Nishiyama,T., Perroud,P.F., Lindquist,E.A., Kamisugi,Y., Tanahashi,T., Sakakibara,K., Fujita,T., Oishi,K., Shin-I,T., Kuroki,Y., Toyoda,A., Suzuki,Y., Hashimoto,S., Yamaguchi,K., Sugano,S., Kohara,Y., Fujiyama,A., Anterola,A., Aoki,S., Ashton,N., Barbazuk,W.B., Barker,E., Bennetzen,J.L., Blankenship,R., Cho,S.H., Dutcher,S.K., Estelle,M., Fawcett,J.A., Gundlach,H., Hanada,K., Heyl,A., Hicks,K.A., Hughes,J., Lohr,M., Mayer,K., Melkozernov,A., Murata,T., Nelson,D.R., Pils,B., Prigge,M., Reiss,B., Renner,T., Rombauts,S., Rushton,P.J., Sanderfoot,A., Schween,G., Shiu,S.H., Stueber,K., Theodoulou,F.L., Tu,H., Van de Peer,Y., Verrier,P.J., Waters,E., Wood,A., Yang,L., Cove,D., Cuming,A.C., Hasebe,M., Lucas,S., Mishler,B.D., Reski,R., Grigoriev,I.V., Quatrano,R.S., Boore,J.L.
Submission:
Submitted (15-NOV-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 31 authorshide authors
Terry,A., Salamov,A., Zhou,K., Pitluck,S., Lucas,S., Detter,J.C., Glavina del Rio,T., Shapiro,H., Tu,H., Lindquist,E., Anterola,A., Ashton,N., Barker,E., Cuming,A., Dutcher,S., Engelken,J., Hughes,J., Lang,D., Ma,S., Merchant,S., Napoli,C., Roberts,A., Rushton,P., Sanderfoot,T., Verrier,P., Wood,A., Rensing,S., Quatrano,R.S., Grigoriev,I., Boore,J.L., US DOE Joint Genome Institute (JGI-PGF)

The Physcomitrella patens whole genome shotgun (WGS) project has the project accession ABEU00000000. This version of the project (01) has the accession number ABEU01000000, and consists of sequences ABEU01000001-ABEU01019135.

URL -- http://www.jgi.doe.gov/Physcomitrella JGI Project ID: 3640246 Source DNA and stock culture is available from Ralph Quatrano (rsq@wustl.edu) Contacts: Ralph Quatrano (rsq@biology2.wustl.edu) Jeff Boore (jlboore@calmail.berkeley.edu) Annotation done by JGI-PGF and the Physcomitrella patens Consortium The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) This version of the project, V1.1, represents 8.1x coverage of the genome.

Contigs
Download
GenBank:ABEU01.1.gbff.gz 194.6 Mb
FASTA:ABEU01.1.fsa_nt.gz 131.4 Mb
ASN.1:ABEU01.1.bbs.gz 103.8 Mb