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Sequence Set Browser

 

ABBV00000000.1 candidate division TM7 single-cell isolate TM7a

Master
# of Contigs: 8,553
# of Proteins: 0
Total length: 2,864,364 bp
BioProject: PRJNA19081
BioSample: SAMN02441791
Keywords: WGS
Organism: candidate division TM7 single-cell isolate TM7ashow lineagehide lineage
Biosource:
/collection_date = 15-May-2006
/environmental_sample
/host = Homo sapiens
/isolation_source = individual cell captured on a microfluidic chip from subgingival plaque
/mol_type = genomic
WGS: ABBV01000001:ABBV01008553
Reference:
Dissecting biological 'dark matter' with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth : Proc. Natl. Acad. Sci. U.S.A. 104 (29), 11889-11894 (2007) – show 11 authorshide authors
Marcy,Y., Ouverney,C., Bik,E.M., Losekann,T., Ivanova,N., Martin,H.G., Szeto,E., Platt,D., Hugenholtz,P., Relman,D.A., Quake,S.R.
Submission:
Submitted (15-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 12 authorshide authors
Marcy,Y., Ouverney,C., Bik,E.M., Loesekann,T., Ivanova,N., Garcia,M.H., Szeto,E., Platt,D., Hugenholtz,P., Relman,D.A., Quake,S.R., US DOE Joint Genome Institute

The candidate division TM7 single-cell isolate TM7a whole genome shotgun (WGS) project has the project accession ABBV00000000. This version of the project (01) has the accession number ABBV01000000, and consists of sequences ABBV01000001-ABBV01008553.

Contacts: Phil Hugenholtz (phugenholtz@lbl.gov) Stephen Quake (quake@stanford.edu) Fully annotated version of this assembly can be found in img.jgi.doe.gov/m under 'microbiomes' and the 'TM7a' heading. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).

##Genome-Assembly-Data-START##
Assembly Method : Newbler v. before 2007; Forge v. before 2007
Single-cell Amplification : Yes
Genome Coverage : Unknown
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:ABBV01.1.gbff.gz 1.8 Mb
FASTA:ABBV01.1.fsa_nt.gz 994.8 kb
ASN.1:ABBV01.1.bbs.gz 912 kb