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Sequence Set Browser

 

AAVQ00000000.1 Scheffersomyces stipitis CBS 6054

Master
# of Contigs: 2
# of Proteins: 1,276
# of Scaffolds: 1
Total length: 3,510,147 bp
BioProject: PRJNA16843
BioSample: SAMN02746101
Keywords: WGS
Annotation: Contigs
Organism: Scheffersomyces stipitis CBS 6054show lineagehide lineage
Biosource:
/chromosome = 1
/mol_type = genomic
/strain = CBS 6054
WGS: AAVQ01000001:AAVQ01000002
Scaffolds: CM000437:CM000437
1 scaffold, total length is 3,510,247 bases
Reference:
Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis : Nat. Biotechnol. 25 (3), 319-326 (2007) – show 13 authorshide authors
Jeffries,T.W., Grigoriev,I.V., Grimwood,J., Laplaza,J.M., Aerts,A., Salamov,A., Schmutz,J., Lindquist,E., Dehal,P., Shapiro,H., Jin,Y.S., Passoth,V., Richardson,P.M.
Submission:
Submitted (02-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 18 authorshide authors
Grigoriev,I., Grimwood,J., Aerts,A., Salamov,A., Zhou,K., Lou,Y., Pitluck,S., Schmutz,J., Myers,R.M., Lucas,S., Detter,J.C., Glavina del Rio,T., Jin,Y.-S., Passoth,V., Laplaza,J.M., Jeffries,T.W., Richardson,P., US DOE Joint Genome Institute

The Scheffersomyces stipitis CBS 6054 whole genome shotgun (WGS) project has the project accession AAVQ00000000. This version of the project (01) has the accession number AAVQ01000000, and consists of sequences AAVQ01000001-AAVQ01000002.

URL -- http://www.jgi.doe.gov/pichia JGI Project ID: 3634480 Source DNA was provided by Jose Laplaza and Thomas Jeffries (twjeffri@wisc.edu) Stock culture is available from Cletus P Kurtzman (kurtsman@ncaur.usda.gov) Contacts: Thomas Jeffries (twjeffri@wisc.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by JGI-PGF Manual curation done by the P. stipitis User Community Finishing done by JGI-Stanford Human Genome Center (www-shgc.stanford.edu) The sequence has less than one error in 100,000 bp. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) CM000437 is the assembly of the two contigs, AAVQ01000001 and AAVQ01000002, into the incomplete chromsome 1. The complete chromosomes, 2-8, are in GenBank records CP000496-CP000502.

Contigs
Proteins
Download
GenBank:AAVQ01.1.gbff.gz 2 Mb
FASTA:AAVQ01.1.fsa_nt.gz 1 Mb
ASN.1:AAVQ01.1.bbs.gz 1.4 Mb