Sign in to NCBI
skip to main content

Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

 

AAFY00000000.1 whale fall metagenome

Master
# of Contigs: 28,151
# of Proteins: 0
Total length: 29,783,639 bp
BioProject: PRJNA32357
BioSample: SAMN02954316
Keywords: WGS
Annotation: Contigs
Organism: whale fall metagenomeshow lineagehide lineage
Biosource:
/country = USA: Pacific Ocean, Santa Cruz Basin
/environmental_sample
/isolation_source = rib bone from gray whale carcass in the Pacific Ocean (depth=1674 meters), Santa Cruz Basin (N33.30 W119.22)
/metagenomic
/mol_type = genomic
WGS: AAFY01000001:AAFY01028151
Reference:
Comparative metagenomics of microbial communities : Science 308 (5721), 554-557 (2005) – show 13 authorshide authors
Tringe,S.G., von Mering,C., Kobayashi,A., Salamov,A.A., Chen,K., Chang,H.W., Podar,M., Short,J.M., Mathur,E.J., Detter,J.C., Bork,P., Hugenholtz,P., Rubin,E.M.
Submission:
Submitted (18-FEB-2005) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA – show 14 authorshide authors
Tringe,S.G., von Mering,C., Kobayashi,A., Salamov,A.A., Chen,K., Chang,H.W., Podar,M., Short,J.M., Mathur,E.J., Detter,J.C., Bork,P., Hugenholtz,P., Rubin,E., DOE Joint Genome Institute

The whale fall metagenome whole genome shotgun (WGS) project has the project accession AAFY00000000. This version of the project (01) has the accession number AAFY01000000, and consists of sequences AAFY01000001-AAFY01028151.

URL -- http://www.jgi.doe.gov Contact: Susannah Tringe SGTringe@lbl.gov.

Contigs
Download
GenBank:AAFY01.1.gbff.gz 13.2 Mb
FASTA:AAFY01.1.fsa_nt.gz 9.4 Mb
ASN.1:AAFY01.1.bbs.gz 22.9 Mb