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Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

 

AAFX00000000.1 soil metagenome

Master
# of Contigs: 139,340
# of Proteins: 0
Total length: 144,897,582 bp
BioProject: PRJNA13699
BioSample: SAMN02954283
Keywords: WGS
Annotation: Contigs
Organism: soil metagenomeshow lineagehide lineage
Biosource:
/country = USA: Waseca County, Minnesota
/environmental_sample
/isolation_source = farm surface soil (0-10cm)
/metagenomic
/mol_type = genomic
WGS: AAFX01000001:AAFX01139340
Reference:
Comparative metagenomics of microbial communities : Science 308 (5721), 554-557 (2005) – show 13 authorshide authors
Tringe,S.G., von Mering,C., Kobayashi,A., Salamov,A.A., Chen,K., Chang,H.W., Podar,M., Short,J.M., Mathur,E.J., Detter,J.C., Bork,P., Hugenholtz,P., Rubin,E.M.
Submission:
Submitted (17-FEB-2005) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA – show 14 authorshide authors
Tringe,S.G., von Mering,C., Kobayashi,A., Salamov,A.A., Chen,K., Chang,H.W., Podar,M., Short,J.M., Mathur,E.J., Detter,J.C., Bork,P., Hugenholtz,P., Rubin,E., DOE Joint Genome Institute

The soil metagenome whole genome shotgun (WGS) project has the project accession AAFX00000000. This version of the project (01) has the accession number AAFX01000000, and consists of sequences AAFX01000001-AAFX01139340.

Surface soil (0-10 cm) was collected in September 2001 from a farm in Waseca County, Minnesota. Biochemical analysis on 20 g of soil from the same site revealed it to be clay loam, with fair to low organic matter content and high levels of most essential elements. Potassium was present at 926.15 mg/kg dry weight and sodium at 75.38 mg/kg; levels of most nonessential elements were low. Microscopic analysis, including Sybr green staining, found the organisms in the sample to be primarily prokaryotic. PCR-amplified 16S rRNA sequences from the sample revealed the presence of numerous bacterial and archaeal lineages. URL -- http://www.jgi.doe.gov Contact: Susannah Tringe SGT@lbl.gov.

Contigs
Download
GenBank:AAFX01.1.gbff.gz 51.9 Mb
 AAFX01.2.gbff.gz 13.9 Mb
FASTA:AAFX01.1.fsa_nt.gz 36.7 Mb
 AAFX01.2.fsa_nt.gz 9.3 Mb
ASN.1:AAFX01.1.bbs.gz 90 Mb
 AAFX01.2.bbs.gz 22.7 Mb