AAEX00000000.3 Canis lupus familiaris :: NCBI
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Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

 

AAEX00000000.3 Canis lupus familiaris

Master
# of Contigs: 27,105
# of Proteins: 0
# of Scaffolds: 1,081
Total length: 2,392,698,509 bp
BioProject: PRJNA13179
BioSample: SAMN02953603
Keywords: WGS
Organism: Canis lupus familiarisshow lineagehide lineage
Biosource:
/breed = boxer
/mol_type = genomic
/sex = female
/sub_species = familiaris
WGS: AAEX03000001:AAEX03027105
Scaffolds: CM000001:CM000039, JH373152:JH374193
1,081 scaffolds, total length is 4,714,465,643 bases
Reference:
Version 3.1 of The Genome Sequence of Canis lupus familiaris (dog) : Unpublished – show 24 authorshide authors
Johnson,J., Pirun,M., Cook,A., Russell,L., Abouelleil,A., Aftuck,L., Arachchi,H., Ayotte,L., Baldwin,J., Berlin,A., Brown,A., FitzGerald,M., Gearin,G., Lui,A., Macdonald,P., Mauceli,E., Priest,M., Shea,T., Sykes,S., Zimmer,A., Lander,E.S., Lindblad-Toh,K., The Broad Institute Genome Sequencing Platform, The Broad Institute Genome Finishing Team
Reference:
Genome sequence, comparative analysis and haplotype structure of the domestic dog : Nature 438 (7069), 803-819 (2005) – show 236 authorshide authors
Lindblad-Toh,K., Wade,C.M., Mikkelsen,T.S., Karlsson,E.K., Jaffe,D.B., Kamal,M., Clamp,M., Chang,J.L., Kulbokas,E.J. III, Zody,M.C., Mauceli,E., Xie,X., Breen,M., Wayne,R.K., Ostrander,E.A., Ponting,C.P., Galibert,F., Smith,D.R., DeJong,P.J., Kirkness,E., Alvarez,P., Biagi,T., Brockman,W., Butler,J., Chin,C.W., Cook,A., Cuff,J., Daly,M.J., DeCaprio,D., Gnerre,S., Grabherr,M., Kellis,M., Kleber,M., Bardeleben,C., Goodstadt,L., Heger,A., Hitte,C., Kim,L., Koepfli,K.P., Parker,H.G., Pollinger,J.P., Searle,S.M., Sutter,N.B., Thomas,R., Webber,C., Baldwin,J., Abebe,A., Abouelleil,A., Aftuck,L., Ait-Zahra,M., Aldredge,T., Allen,N., An,P., Anderson,S., Antoine,C., Arachchi,H., Aslam,A., Ayotte,L., Bachantsang,P., Barry,A., Bayul,T., Benamara,M., Berlin,A., Bessette,D., Blitshteyn,B., Bloom,T., Blye,J., Boguslavskiy,L., Bonnet,C., Boukhgalter,B., Brown,A., Cahill,P., Calixte,N., Camarata,J., Cheshatsang,Y., Chu,J., Citroen,M., Collymore,A., Cooke,P., Dawoe,T., Daza,R., Decktor,K., DeGray,S., Dhargay,N., Dooley,K., Dooley,K., Dorje,P., Dorjee,K., Dorris,L., Duffey,N., Dupes,A., Egbiremolen,O., Elong,R., Falk,J., Farina,A., Faro,S., Ferguson,D., Ferreira,P., Fisher,S., FitzGerald,M., Foley,K., Foley,C., Franke,A., Friedrich,D., Gage,D., Garber,M., Gearin,G., Giannoukos,G., Goode,T., Goyette,A., Graham,J., Grandbois,E., Gyaltsen,K., Hafez,N., Hagopian,D., Hagos,B., Hall,J., Healy,C., Hegarty,R., Honan,T., Horn,A., Houde,N., Hughes,L., Hunnicutt,L., Husby,M., Jester,B., Jones,C., Kamat,A., Kanga,B., Kells,C., Khazanovich,D., Kieu,A.C., Kisner,P., Kumar,M., Lance,K., Landers,T., Lara,M., Lee,W., Leger,J.P., Lennon,N., Leuper,L., LeVine,S., Liu,J., Liu,X., Lokyitsang,Y., Lokyitsang,T., Lui,A., Macdonald,J., Major,J., Marabella,R., Maru,K., Matthews,C., McDonough,S., Mehta,T., Meldrim,J., Melnikov,A., Meneus,L., Mihalev,A., Mihova,T., Miller,K., Mittelman,R., Mlenga,V., Mulrain,L., Munson,G., Navidi,A., Naylor,J., Nguyen,T., Nguyen,N., Nguyen,C., Nguyen,T., Nicol,R., Norbu,N., Norbu,C., Novod,N., Nyima,T., Olandt,P., O'Neill,B., O'Neill,K., Osman,S., Oyono,L., Patti,C., Perrin,D., Phunkhang,P., Pierre,F., Priest,M., Rachupka,A., Raghuraman,S., Rameau,R., Ray,V., Raymond,C., Rege,F., Rise,C., Rogers,J., Rogov,P., Sahalie,J., Settipalli,S., Sharpe,T., Shea,T., Sheehan,M., Sherpa,N., Shi,J., Shih,D., Sloan,J., Smith,C., Sparrow,T., Stalker,J., Stange-Thomann,N., Stavropoulos,S., Stone,C., Stone,S., Sykes,S., Tchuinga,P., Tenzing,P., Tesfaye,S., Thoulutsang,D., Thoulutsang,Y., Topham,K., Topping,I., Tsamla,T., Vassiliev,H., Venkataraman,V., Vo,A., Wangchuk,T., Wangdi,T., Weiand,M., Wilkinson,J., Wilson,A., Yadav,S., Yang,S., Yang,X., Young,G., Yu,Q., Zainoun,J., Zembek,L., Zimmer,A., Lander,E.S.
Submission:
Submitted (08-JUL-2004) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02142, USA – show 213 authorshide authors
Lindblad-toh,K., Birren,B., Nusbaum,C., Abebe,A., Abouelleil,A., Adekoya,E., Ait-zahra,M., Allen,N., Allen,T., An,P., Anderson,M., Anderson,S., Arachchi,H., Armbruster,J., Bachantsang,P., Baldwin,J., Barry,A., Bayul,T., Blitshsteyn,B., Bloom,T., Blye,J., Boguslavskiy,L., Borowsky,M., Boukhgalter,B., Brunache,A., Butler,J., Calixte,N., Calvo,S., Camarata,J., Campo,K., Chang,J., Cheshatsang,Y., Citroen,M., Collymore,A., Considine,T., Cook,A., Cooke,P., Corum,B., Cuomo,C., David,R., Dawoe,T., Degray,S., Dodge,S., Dooley,K., Dorje,P., Dorjee,K., Dorris,L., Duffey,N., Dupes,A., Elkins,T., Engels,R., Erickson,J., Farina,A., Faro,S., Ferreira,P., Fischer,H., Fitzgerald,M., Foley,K., Gage,D., Galagan,J., Gearin,G., Gnerre,S., Gnirke,A., Goyette,A., Graham,J., Grandbois,E., Gyaltsen,K., Hafez,N., Hagopian,D., Hagos,B., Hall,J., Hatcher,B., Heller,A., Higgins,H., Honan,T., Horn,A., Houde,N., Hughes,L., Hulme,W., Husby,E., Iliev,I., Jaffe,D., Jones,C., Kamal,M., Kamat,A., Kamvysselis,M., Karlsson,E., Kells,C., Kieu,A., Kisner,P., Kodira,C., Kulbokas,E., Labutti,K., Lama,D., Landers,T., Leger,J., Levine,S., Lewis,D., Lewis,T., Liu,X., Lokyitsang,T., Lokyitsang,Y., Lucien,O., Lui,A., Ma,L.J., Mabbitt,R., Macdonald,J., Maclean,C., Major,J., Manning,J., Marabella,R., Maru,K., Matthews,C., Mauceli,E., Mccarthy,M., Mcdonough,S., Mcghee,T., Meldrim,J., Meneus,L., Mesirov,J., Mihalev,A., Mihova,T., Mikkelsen,T., Mlenga,V., Moru,K., Mozes,J., Mulrain,L., Munson,G., Naylor,J., Newes,C., Nguyen,C., Nguyen,N., Nguyen,T., Nicol,R., Nielsen,C., Nizzari,M., Norbu,C., Norbu,N., O'donnell,P., Okoawo,O., O'leary,S., Omotosho,B., O'neill,K., Osman,S., Parker,S., Perrin,D., Phunkhang,P., Piqani,B., Purcell,S., Rachupka,T., Ramasamy,U., Rameau,R., Ray,V., Raymond,C., Retta,R., Richardson,S., Rise,C., Rodriguez,J., Rogers,J., Rogov,P., Rutman,M., Schupbach,R., Seaman,C., Settipalli,S., Sharpe,T., Sheridan,J., Sherpa,N., Shi,J., Smirnov,S., Smith,C., Sougnez,C., Spencer,B., Stalker,J., Stange-thomann,N., Stavropoulos,S., Stetson,K., Stone,C., Stone,S., Stubbs,M., Talamas,J., Tchuinga,P., Tenzing,P., Tesfaye,S., Theodore,J., Thoulutsang,Y., Topham,K., Towey,S., Tsamla,T., Tsomo,N., Vallee,D., Vassiliev,H., Venkataraman,V., Vinson,J., Vo,A., Wade,C., Wang,S., Wangchuk,T., Wangdi,T., Whittaker,C., Wilkinson,J., Wu,Y., Wyman,D., Yadav,S., Yang,S., Yang,X., Yeager,S., Yee,E., Young,G., Zainoun,J., Zembeck,L., Zimmer,A., Zody,M., Lander,E.
Submission:
Submitted (06-SEP-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 22 authorshide authors
Johnson,J., Pirun,M., Cook,A., Russell,L., Abouelleil,A., Aftuck,L., Arachchi,H., Ayotte,L., Baldwin,J., Berlin,A., Brown,A., FitzGerald,M., Gearin,G., Lui,A., Macdonald,P., Mauceli,E., Priest,M., Shea,T., Sykes,S., Zimmer,A., Lander,E.S., Lindblad-Toh,K.
Submission:
Submitted (08-JUL-2004) Agencourt Bioscience Corporation, 100 Cummings Center Suite 107G, Beverly, MA 01915, USA – Smith,D., Bosek,S.

On Oct 24, 2011 this sequence version replaced gi:63145786.

The Canis lupus familiaris whole genome shotgun (WGS) project has the project accession AAEX00000000. This version of the project (03) has the accession number AAEX03000000, and consists of sequences AAEX03000001-AAEX03027105.

##Genome-Assembly-Data-START##
Assembly Date : APR-2010
Assembly Method : Arachne v. April 2010
Assembly Name : CanFam3.1
Genome Coverage : 7x plus >90Mb finished sequence
Sequencing Technology : Sanger
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AAEX03.1.gbff.gz 212.6 Mb
 AAEX03.2.gbff.gz 211.4 Mb
 AAEX03.3.gbff.gz 211.3 Mb
 AAEX03.4.gbff.gz 210.8 Mb
 AAEX03.5.gbff.gz 166.8 Mb
FASTA:AAEX03.1.fsa_nt.gz 144.9 Mb
 AAEX03.2.fsa_nt.gz 144.7 Mb
 AAEX03.3.fsa_nt.gz 144.7 Mb
 AAEX03.4.fsa_nt.gz 144.7 Mb
 AAEX03.5.fsa_nt.gz 109.5 Mb
ASN.1:AAEX03.1.bbs.gz 114.9 Mb
 AAEX03.2.bbs.gz 114.6 Mb
 AAEX03.3.bbs.gz 114.6 Mb
 AAEX03.4.bbs.gz 114.5 Mb
 AAEX03.5.bbs.gz 85.7 Mb