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Sequence Set Browser

 

AACY000000000.2 marine metagenome

Master
# of Contigs: 4,124,495
# of Proteins: 6,123,395
# of Scaffolds: 3,087,206
Total length: 4,468,504,316 bp
BioProject: PRJNA13694
BioSample: SAMN02954345
Keywords: WGS
Annotation: Scaffolds
Organism: marine metagenomeshow lineagehide lineage
Biosource:
/environmental_sample
/isolation_source = isolated as part of a large dataset composed predominantly from surface water marine samples collected along a voyage from Eastern North American coast to the Eastern Pacific Ocean, including locations in the Sargasso Sea, Panama Canal, and the Galapagos Islands
/metagenomic
/mol_type = genomic
WGS: AACY020000001:AACY024124495
Scaffolds: EM000001:EM999999, EN000001:EN999999, EP000001:EP999999, EQ000001:EQ087209
3,087,206 scaffolds, 6,123,395 proteins, total length is 4,552,931,459 bases
Reference:
Environmental genome shotgun sequencing of the Sargasso Sea : Science 304 (5667), 66-74 (2004) – show 23 authorshide authors
Venter,J.C., Remington,K., Heidelberg,J.F., Halpern,A.L., Rusch,D., Eisen,J.A., Wu,D., Paulsen,I., Nelson,K.E., Nelson,W., Fouts,D.E., Levy,S., Knap,A.H., Lomas,M.W., Nealson,K., White,O., Peterson,J., Hoffman,J., Parsons,R., Baden-Tillson,H., Pfannkoch,C., Rogers,Y.H., Smith,H.O.
Reference:
Structural and Functional Diversity of the Microbial Kinome : PLoS Biol. 5 (3), E17 (2007) – Kannan,N., Taylor,S.S., Zhai,Y., Venter,J.C., Manning,G.
Reference:
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific : PLoS Biol. 5 (3), E77 (2007) – show 40 authorshide authors
Rusch,D.B., Halpern,A.L., Sutton,G., Heidelberg,K.B., Williamson,S., Yooseph,S., Wu,D., Eisen,J.A., Hoffman,J.M., Remington,K., Beeson,K., Tran,B., Smith,H., Baden-Tillson,H., Stewart,C., Thorpe,J., Freeman,J., Andrews-Pfannkoch,C., Venter,J.E., Li,K., Kravitz,S., Heidelberg,J.F., Utterback,T., Rogers,Y.H., Falcon,L.I., Souza,V., Bonilla-Rosso,G., Eguiarte,L.E., Karl,D.M., Sathyendranath,S., Platt,T., Bermingham,E., Gallardo,V., Tamayo-Castillo,G., Ferrari,M.R., Strausberg,R.L., Nealson,K., Friedman,R., Frazier,M., Venter,J.C.
Reference:
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families : PLoS Biol. 5 (3), E16 (2007) – show 33 authorshide authors
Yooseph,S., Sutton,G., Rusch,D.B., Halpern,A.L., Williamson,S.J., Remington,K., Eisen,J.A., Heidelberg,K.B., Manning,G., Li,W., Jaroszewski,L., Cieplak,P., Miller,C.S., Li,H., Mashiyama,S.T., Joachimiak,M.P., van Belle,C., Chandonia,J.M., Soergel,D.A., Zhai,Y., Natarajan,K., Lee,S., Raphael,B.J., Bafna,V., Friedman,R., Brenner,S.E., Godzik,A., Eisenberg,D., Dixon,J.E., Taylor,S.S., Strausberg,R.L., Frazier,M., Venter,J.C.
Submission:
Submitted (12-JAN-2004) The Institute for Biological Energy Alternatives, 1901 Research Blvd., Rockville, MD 20850, USA – show 23 authorshide authors
Venter,J.C., Remington,K., Heidelberg,J., Halpern,A.L., Rusch,D., Eisen,J.A., Wu,D., Paulsen,I., Nelson,K.E., Nelson,W., Fouts,D.E., Levy,S., Knap,A.H., Lomas,M.W., Nealson,K., White,O., Peterson,J., Hoffman,J., Parsons,R., Baden-Tillson,H., Pfannkoch,C., Rogers,Y.-H., Smith,H.O.
Submission:
Submitted (02-MAR-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – J. Craig Venter Institute

The marine metagenome whole genome shotgun (WGS) project has the project accession AACY000000000. This version of the project (02) has the accession number AACY020000000, and consists of sequences AACY020000001-AACY024124495.

For complete environmental metadata relating to this record, background on the Global Ocean Sampling expedition, as well as additional analysis results, please visit the CAMERA website (http://camera.calit2.net).

Contigs
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