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Shotgun Assembly Sequences: Genome (WGS) and Transcriptome (TSA)

 

AACB00000000.2 Giardia lamblia ATCC 50803

Master
# of Contigs: 306
# of Proteins: 7,364
# of Scaffolds: 92
Total length: 11,192,215 bp
BioProject: PRJNA1439
BioSample: SAMN02952905
Keywords: WGS
Annotation: Contigs
Organism: Giardia lamblia ATCC 50803show lineagehide lineage
Biosource:
/mol_type = genomic genomic
/strain = WB C6
WGS: AACB02000001:AACB02000306
Scaffolds: CH991761:CH991852
92 scaffolds, total length is 11,213,615 bases
Reference:
Genomic minimalism in the early diverging intestinal parasite Giardia lamblia : Science 317 (5846), 1921-1926 (2007) – show 29 authorshide authors
Morrison,H.G., McArthur,A.G., Gillin,F.D., Aley,S.B., Adam,R.D., Olsen,G.J., Best,A.A., Cande,W.Z., Chen,F., Cipriano,M.J., Davids,B.J., Dawson,S.C., Elmendorf,H.G., Hehl,A.B., Holder,M.E., Huse,S.M., Kim,U.U., Lasek-Nesselquist,E., Manning,G., Nigam,A., Nixon,J.E., Palm,D., Passamaneck,N.E., Prabhu,A., Reich,C.I., Reiner,D.S., Samuelson,J., Svard,S.G., Sogin,M.L.
Submission:
Submitted (25-MAR-2003) Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543-1015, USA – show 7 authorshide authors
Morrison,H.G., McArthur,A.G., Adam,R.D., Aley,S.B., Gillin,F.D., Olsen,G.J., Sogin,M.L.
Submission:
Submitted (02-JUL-2007) Josephine Bay Paul Center, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543-1015, USA – show 28 authorshide authors
Morrison,H.G., McArthur,A.G., Gillin,F.D., Aley,S.B., Adam,R.D., Olsen,G.J., Best,A.A., Cande,W.Z., Cipriano,M.J., Davids,B.J., Dawson,S.C., Elmendorf,H.G., Hehl,A.B., Holder,M.E., Huse,S.M., Kim,U.U., Lasek-Nesselquist,E., Manning,G., Nigam,A., Nixon,J.E., Palm,D., Passamaneck,N.E., Prabhu,A., Reich,C.I., Reiner,D.S., Samuelson,J., Svard,S.G., Sogin,M.L.

On Sep 24, 2007 this sequence version replaced gi:29251555.

The Giardia lamblia ATCC 50803 whole genome shotgun (WGS) project has the project accession AACB00000000. This version of the project (02) has the accession number AACB02000000, and consists of sequences AACB02000001-AACB02000306.

Long-term curation of the sequence and subsequent annotation updates will be the responsibility of the ApiDB/EuPathDB Bioinformatics Resource Center http://EuPathDB.org. Annotation can be viewed at http://GiardiaDB.org and inquires can be sent to help@GiardiaDB.org. This version of the project is assembly GL2. Annotation was updated on the contigs in March 2010.

Contigs
Proteins
Download
GenBank:AACB02.1.gbff.gz 7.3 Mb
FASTA:AACB02.1.fsa_nt.gz 3.3 Mb
ASN.1:AACB02.1.bbs.gz 5.4 Mb