LOCUS AEKQ02000268 2720 bp DNA linear ROD 14-AUG-2012
DEFINITION Mus musculus strain C57BL/6J cont2.268, whole genome shotgun
sequence.
ACCESSION AEKQ02000268 AEKQ02000000
VERSION AEKQ02000268.1
DBLINK BioProject: PRJNA59879
BioSample: SAMN02981292
KEYWORDS WGS.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2720)
AUTHORS Gnerre,S., Maccallum,I., Przybylski,D., Ribeiro,F.J., Burton,J.N.,
Walker,B.J., Sharpe,T., Hall,G., Shea,T.P., Sykes,S., Berlin,A.M.,
Aird,D., Costello,M., Daza,R., Williams,L., Nicol,R., Gnirke,A.,
Nusbaum,C., Lander,E.S. and Jaffe,D.B.
TITLE High-quality draft assemblies of mammalian genomes from massively
parallel sequence data
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 108 (4), 1513-1518 (2011)
PUBMED 21187386
REFERENCE 2 (bases 1 to 2720)
AUTHORS Williams,L.J., Tabbaa,D.G., Li,N., Berlin,A.M., Shea,T.P.,
Maccallum,I., Lawrence,M.S., Drier,Y., Getz,G., Young,S.K.,
Jaffe,D.B., Nusbaum,C. and Gnirke,A.
TITLE Paired-end sequencing of Fosmid libraries by Illumina
JOURNAL Genome Res. (2012) In press
PUBMED 22800726
REMARK Publication Status: Available-Online prior to print
REFERENCE 3 (bases 1 to 2720)
AUTHORS Gnerre,S., MacCallum,I., Przybylski,D., Ribeiro,F.J., Burton,J.N.,
Walker,B.J., Sharpe,T., Hall,G., Shea,T.P., Sykes,S., Berlin,A.M.,
Aird,D., Costello,M., Daza,R., Williams,L., Nicol,R., Gnirke,A.,
Nusbaum,C., Lander,E.S. and Jaffe,D.B.
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2010) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
REFERENCE 4 (bases 1 to 2720)
AUTHORS Williams,L.J.S., Tabbaa,D.G., Li,N., Berlin,A.M., Shea,T.P.,
MacCallum,I., Lawrence,M.S., Drier,Y., Getz,G., Young,S.K.,
Jaffe,D.B., Nusbaum,C. and Gnirke,A.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2012) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT The 01 versions of WGS projects AEKQ00000000 and AEKR00000000 are
assembled from the same sequence reads using different
methodologies. The AEKQ00000000 contigs were assembled with
ALLPATHS-LG v. 34731, and the AEKR00000000 contigs were assembled
with SOAPdenovo v. 1.05. They are reported in Gnerre et al. 2011,
PNAS.
This 02 version of AEKQ00000000 was de novo assembled using the
ALLPATHS-LG assembler from Illumina sequence data, in support of
the paper by Williams et al. 2012 Genome Res. The 01 version,
AEKQ01000000 can be still retrieved in Entrez Assembly by a search
for its accession prefix plus version, AEKQ01, or its assembly
name, MmusALLPATHS1.
##Genome-Assembly-Data-START##
Assembly Method :: Allpaths v. 40349
Assembly Name :: MmusALLPATHS2
Genome Coverage :: 85x
Sequencing Technology :: Illumina GAII; Illumina HiSeq
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2720
/organism="Mus musculus"
/mol_type="genomic DNA"
/submitter_seqid="cont2.268"
/strain="C57BL/6J"
/db_xref="taxon:10090"
/sex="female"
/note="ALLPATHS-LG assembly"
ORIGIN
1 aactcacttt gtagaccagg ctgacctcaa actcagaaat ccgcctgcct ctgcctctcg
61 agtgctggga ctaaaggcgt gcaccaccac tccccacaaa agaaatcttt taattacatt
121 aaagttttta agccctcccc accctttgct gtttttagga tatttccagt taagaaagat
181 gatgcttcag catttacaac actgataata acactttgag gatcacaaac tattgtcata
241 aacaccaatt cagctcatta catacttgga aggtagtcga agaatctaaa gaaatgtact
301 atgttttaaa gagatttggc ccacttctgc acactggaga gaagaatcac ttggtataat
361 tatctaaaat cgcaagagac ctcaatttaa aaacagaata aagttactgg aattcaaatc
421 tgcaggcttg ttgcgatcat cagtctcact gtcaccttgg aaaggaccct cgggagaact
481 gtccagatca ggctggctca gttcatgggg gtgctggaga gccccttgat tggtttcctt
541 gatttcgttc accgaggtgg gaagactctc cccacccttg ggcagcacca tttcctgggc
601 tgggttctgg cctaacaaca gttccataga aagggactgt gcactagacg actttgttgc
661 tatttcttga ccatgaatgt gacatgccca gctacctcat gctcctgctg ggctgtgggc
721 caaaaataac cccccttacg tgcttaagtt tcttttcttt tcttttcttt tcttttcttt
781 ccttttgaaa caagatctca caaccctggc tacaggcacc tgcctctgcc tctgttttgg
841 ggagccaggg tccctctttg tacttttttt tttttttaga tttatttatt aacattgtag
901 ctgacttcag acacaccaga agagggcgtc agatctcatt acaggtggtt gtgagccacc
961 acgtggttgc tgggatttga actcaggacc ttgggaagac cagcctccac accccccacc
1021 ccatgtactt tctagctagc ctaggactca ccatacagcc cccgaactca taagaagagc
1081 tgcccacctc agctcctggg gctttcaatc ccagaaagcc atgtgccacc actccctgcc
1141 caacttttcc ttccaaaacc catttctcca ttgtcttaaa tcctactagc gtttggaagt
1201 gcaacagatc caatgttcat tacctacaga ttctataaga aacaaaacat ctaattttat
1261 cctcttcaaa caccagggag ctgtccagag gaagtcattc actggataca gagaagagga
1321 aaggcaagat gccttgagtc acaaaagact gtccctgtcc ccccaagacc ctgttcaggt
1381 cctgtctcct cccagggctc ttccttcaac cttatgaatg tttacatctt tctccaaagt
1441 cctgcaaggc tgattgtgag acagctggca tccatcactg cctttaattc cagtcaaaat
1501 atgattattc caatagggat aggaagctga aaacaatcta atcagagacg gacaggcatg
1561 cttgcaagga gccacaatga aactcaaatt agcatgacgc tgctattctg aagaggagga
1621 agctgagaaa actttcccag aaaagatgac atgtgacctg tctttgaaag gagtagaatt
1681 tcaccaagtt ataacgtcgg ggtaggggtg aaaggagggg ggttttcatt cctccagcag
1741 aaaagccagt ggtgcctgaa atggaaaagt ggcagtaagc aaagatggaa agaggaattg
1801 ggggtctggt ggggaaagcg ctaatttgta ctctaaaaat gaaatgaaaa gctttgtcta
1861 gattttgaac ttctcaagag ccaagatcaa tcatattctc cataaatgct ctattagtat
1921 acccctaagc ccccaagccc ggcaaacaga tactcatttg ttgacagaca taaaaccctg
1981 tgtcatctgt gtgatgtcac tgttaggagg ggttgttcaa ggtgttttgg gtagcactga
2041 acctgtggtt taaaagtgac aataacttca gtaaaagtgg cccatttttc ttaaaatgtc
2101 ctattccccc atcactactg aggtctcatt ctgtgtcttt actgtggctt cagttttcta
2161 cagttaagtg cctcctggtt tcctgcataa gggtaccctg cggccacaga ctgccacacc
2221 accaccattc cacactggca gctataatta aagagtagta ggattatggg ggggggggtg
2281 ctatttaatt gctctcattc attcactcaa caatcataaa accctatggt acctaaccag
2341 gaaaccgagg gggaggatcc tggcacgggg accggcatct gtcggagctg cacgccggcc
2401 caagctgaac acaaaagaat cctccagaaa gggtctttca agcgaaaaga aaagatctct
2461 gacccccggc gccgggaacc gcgttcagat ttcgtcgtaa acagctgttt cggtcggcga
2521 gggcaggggc gcgccgggga gtccggcctg gagggtgggc ctcacccatc cctgttctcc
2581 tcctcgctcc accctgcatc ctcgggaccc gaccggctgg gagaggtcca gaaaccggag
2641 cgctttcgcc cggtggatcc cgggccggcc cgccggcctc tgccccgctc acctgccgcg
2701 gcgtcggcga ccacccaggg
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