LOCUS AAGJ04000387 272 bp DNA linear INV 10-JUN-2011
DEFINITION Strongylocentrotus purpuratus Contig387, whole genome shotgun
sequence.
ACCESSION AAGJ04000387 AAGJ04000000
VERSION AAGJ04000387.1
DBLINK BioProject: PRJNA10736
BioSample: SAMN00829422
KEYWORDS WGS.
SOURCE Strongylocentrotus purpuratus (purple sea urchin)
ORGANISM Strongylocentrotus purpuratus
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
Echinoidea; Euechinoidea; Echinacea; Echinoida;
Strongylocentrotidae; Strongylocentrotus.
REFERENCE 1 (bases 1 to 272)
AUTHORS Song,X.-Z., Shen,Y., Liu,Y., Adams,C., Agbai II,O., Allen,C.,
Alsbrooks,S., Archer,P., Arredondo,H., Bandaranaike,D., Bangura,L.,
Beltran,B., Beraducci,A., Biswalo,K., Blyth,P., Buhay,C., Burch,P.,
Cadoree,I., Canada,A., Cardenas,V., Carter,K., Cavazos,I.,
Chacko,J., Chahrour,M., Chavez,D., Chen,A., Chen,G., Chen,R.,
Cheng,M.-T., Chu,J., Clerc,K., Cockrell,R., Coyle,M., Cree,A.,
Curry,S., Dai,W., Davila,M.L., Davis,C., Davy-Carroll,L., De
Anda,C., Delgado,O., Denson,S., Deramo,C., Ding,Y., Dinh,H.,
Donlin,J., McCauley,S., Dugan-Rocha,S., Dunn,A., Durbin,K.,
Dziuda,D., Egan,A., Escotto,M., Espinosa,V., Fa,M., Fernandez,S.,
Fernando,P., Flagg,N., Forbes,L., Fowler,G.J., Fu,Q., Fuh,E.,
Garcia,A., Garcia,R., Garner,T., Gench,S., Ghose,S., Gill,R.,
Gonzalez,D., Guevara,W., Holder,M., Haaland,W., Haeberlen,K.,
Hall,B., Hamid,H., Hamilton,K., Harbes,B., Havlak,P., Hawes,A.,
Hawkins,E., Hayes,S., Hernandez,J., Hines,S., Hitchens,M.,
Hogues,M., Hollins,B., Howell,L.T., Hume,J., Imo,K., Jackson,L.,
Jacob,L., Jiang,H., Johnson,B., Johnson,R., Kelly,S., Keys,T.,
Khan,Z., King,L., Kovar,C., Kowis,A., Lara,F., Lee,K., Lee,S.,
LeGall,F.I., Lemon,S., Lewis,L., Li,B., Li,Y., Li,Z., Linnell,M.,
Liu,W., Liu,Y.-S., Liyanage,D., London,P., Lopez,J.,
Lorensuhewa,L., Lozado,R., Madu,R., Maheshwari,M., Mahoney,C.,
Malloy,K., Mansouri,D., Martinez,E., Mercadao,C., Metzker,M.,
Minja,E., Morgan,M., Morris,S., Munidasa,M., Nazareth,L., Ngo,D.,
Nguyen,N., Nott,A., Nwaokelemeh,O., Obregon,M., Ochi-Okorie,C.,
Odeh,E., Okwuonu,G., Okwuonu,K., Parker,D., Pasternak,S., Patel,B.,
Patel,V., Paul,H., Perez,A., Perez,L., Pham,T., Primus,E.,
Pu,L.-L., Puazo,M., Qin,X., Quinn,A., Quiroz,J., Rabata,D.,
Rachlin,E., Ren,Y., Rodriguez,F., Rojas,A., Ruiz,S.J., Sana,M.,
Sanders,W., Santibanez,J., Santos,R., Savery,G., Scherer,S.,
Shen,H., Sisson,I., Sorelle,R., Svatek,A., Taylor,E., Taylor,T.,
Thomas,N., Thorn,R., Thornton,R., Trejos,Z., Usmani,K., Vargo,C.,
Verduzco,D., Villasana,D., Waldron,L., Wang,Q., Wang,S., Warren,J.,
Wei,X., Wheeler,D., Williams,G., Williams,R., Wright,R., Wu,J.,
Yakub,S., Yan,K., Yuan,Y., Yu,F., Zhang,J., Zhang,L., Zhou,J.,
Davidson,E., Cameron,R.A., Sodergren,E., Worley,K.C., Muzny,D.,
Weinstock,G. and Gibbs,R.A.
CONSRTM Human Genome Sequencing Center
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2005) Human Genome Sequencing Center, Baylor
College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
REFERENCE 2 (bases 1 to 272)
AUTHORS Deng,J., Liu,Y., Angeri,F., Arias,F., Bandaranaike,D., Bess,C.,
Blankenburg,K., Chen,D., Deiros,R.D.R., Denson,S., Dinh,H.,
Francisco,L., Fu,Q., Gubbala,S., Han,Y., Hiang,H., Javaid,M.,
Jayaseelan,J.C., Jing,C., Jones,J., Korchina,V., Lara,F., Lee,S.,
Li,H., Mims,S., Munidasa,M., Ngo,R., Nguyen,L., Ongeri,F.,
Osuji,N., Palculict,T., Patil,S., Paul,S., Pellon,M., Perales,L.,
Pu,L., Puazo,M., Qin,X., Qu,C., Raj,R., Saada,N., Shafer,J.,
Shah,N., Song,H., Tang,L., Vee,V., Wang,Y., Weissenberger,G.,
Xin,Y., Nazareth,L., Newsham,I., Wang,M., Wu,Y., Worley,K.C.,
Reid,J.G., Han,Y., Muzny,D.M. and Gibbs,R.
TITLE Direct Submission
JOURNAL Submitted (28-APR-2011) Human Genome Sequencing Center, Department
of Molecular and Human Genetics, Baylor College of Medicine, One
Baylor Plaza, Houston, TX 77030, USA
COMMENT Contact ncbi-contacts@bcm.tmc.edu for more information.
This revised assembly of the sea urchin incorporated Illumina data
using the Atlas-Link and Atlas-GapFill software to combine with the
existing assembly of Sanger and SOLiD data.
##Genome-Assembly-Data-START##
Assembly Method :: Atlas v. WGS for Sanger Assembly,
Atlas-Link and Atlas-GapFill for SOLiD and
Illumina improvement
Assembly Name :: Spur_3.1
Genome Coverage :: 8.3x Sanger; 18x SOLiD; 40x Illumina
Sequencing Technology :: Sanger; SOLiD; Illumina
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..272
/organism="Strongylocentrotus purpuratus"
/mol_type="genomic DNA"
/submitter_seqid="Contig387"
/db_xref="taxon:7668"
/sex="male"
/tissue_type="sperm"
ORIGIN
1 catccttaaa ccaatgcaca taatcaaaat aattttcaca cataactgtc atcacgcact
61 cctcttccca tctgcccttc ctccttctcc tcctacccca ctgcaccatt tcttctctgc
121 cccatccttg agcatcatca atcagtgcac agcatactgt cacagatgca actgcaagac
181 acgactgtcc tcatatattc ccacacctcc tccttaccct ttctctctct tcatctcctc
241 tcacctctcc cctcccatca tctcctccct gc
//