LOCUS AAGJ04000362 1049 bp DNA linear INV 10-JUN-2011
DEFINITION Strongylocentrotus purpuratus Contig362, whole genome shotgun
sequence.
ACCESSION AAGJ04000362 AAGJ04000000
VERSION AAGJ04000362.1
DBLINK BioProject: PRJNA10736
BioSample: SAMN00829422
KEYWORDS WGS.
SOURCE Strongylocentrotus purpuratus (purple sea urchin)
ORGANISM Strongylocentrotus purpuratus
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa;
Echinoidea; Euechinoidea; Echinacea; Echinoida;
Strongylocentrotidae; Strongylocentrotus.
REFERENCE 1 (bases 1 to 1049)
AUTHORS Song,X.-Z., Shen,Y., Liu,Y., Adams,C., Agbai II,O., Allen,C.,
Alsbrooks,S., Archer,P., Arredondo,H., Bandaranaike,D., Bangura,L.,
Beltran,B., Beraducci,A., Biswalo,K., Blyth,P., Buhay,C., Burch,P.,
Cadoree,I., Canada,A., Cardenas,V., Carter,K., Cavazos,I.,
Chacko,J., Chahrour,M., Chavez,D., Chen,A., Chen,G., Chen,R.,
Cheng,M.-T., Chu,J., Clerc,K., Cockrell,R., Coyle,M., Cree,A.,
Curry,S., Dai,W., Davila,M.L., Davis,C., Davy-Carroll,L., De
Anda,C., Delgado,O., Denson,S., Deramo,C., Ding,Y., Dinh,H.,
Donlin,J., McCauley,S., Dugan-Rocha,S., Dunn,A., Durbin,K.,
Dziuda,D., Egan,A., Escotto,M., Espinosa,V., Fa,M., Fernandez,S.,
Fernando,P., Flagg,N., Forbes,L., Fowler,G.J., Fu,Q., Fuh,E.,
Garcia,A., Garcia,R., Garner,T., Gench,S., Ghose,S., Gill,R.,
Gonzalez,D., Guevara,W., Holder,M., Haaland,W., Haeberlen,K.,
Hall,B., Hamid,H., Hamilton,K., Harbes,B., Havlak,P., Hawes,A.,
Hawkins,E., Hayes,S., Hernandez,J., Hines,S., Hitchens,M.,
Hogues,M., Hollins,B., Howell,L.T., Hume,J., Imo,K., Jackson,L.,
Jacob,L., Jiang,H., Johnson,B., Johnson,R., Kelly,S., Keys,T.,
Khan,Z., King,L., Kovar,C., Kowis,A., Lara,F., Lee,K., Lee,S.,
LeGall,F.I., Lemon,S., Lewis,L., Li,B., Li,Y., Li,Z., Linnell,M.,
Liu,W., Liu,Y.-S., Liyanage,D., London,P., Lopez,J.,
Lorensuhewa,L., Lozado,R., Madu,R., Maheshwari,M., Mahoney,C.,
Malloy,K., Mansouri,D., Martinez,E., Mercadao,C., Metzker,M.,
Minja,E., Morgan,M., Morris,S., Munidasa,M., Nazareth,L., Ngo,D.,
Nguyen,N., Nott,A., Nwaokelemeh,O., Obregon,M., Ochi-Okorie,C.,
Odeh,E., Okwuonu,G., Okwuonu,K., Parker,D., Pasternak,S., Patel,B.,
Patel,V., Paul,H., Perez,A., Perez,L., Pham,T., Primus,E.,
Pu,L.-L., Puazo,M., Qin,X., Quinn,A., Quiroz,J., Rabata,D.,
Rachlin,E., Ren,Y., Rodriguez,F., Rojas,A., Ruiz,S.J., Sana,M.,
Sanders,W., Santibanez,J., Santos,R., Savery,G., Scherer,S.,
Shen,H., Sisson,I., Sorelle,R., Svatek,A., Taylor,E., Taylor,T.,
Thomas,N., Thorn,R., Thornton,R., Trejos,Z., Usmani,K., Vargo,C.,
Verduzco,D., Villasana,D., Waldron,L., Wang,Q., Wang,S., Warren,J.,
Wei,X., Wheeler,D., Williams,G., Williams,R., Wright,R., Wu,J.,
Yakub,S., Yan,K., Yuan,Y., Yu,F., Zhang,J., Zhang,L., Zhou,J.,
Davidson,E., Cameron,R.A., Sodergren,E., Worley,K.C., Muzny,D.,
Weinstock,G. and Gibbs,R.A.
CONSRTM Human Genome Sequencing Center
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2005) Human Genome Sequencing Center, Baylor
College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
REFERENCE 2 (bases 1 to 1049)
AUTHORS Deng,J., Liu,Y., Angeri,F., Arias,F., Bandaranaike,D., Bess,C.,
Blankenburg,K., Chen,D., Deiros,R.D.R., Denson,S., Dinh,H.,
Francisco,L., Fu,Q., Gubbala,S., Han,Y., Hiang,H., Javaid,M.,
Jayaseelan,J.C., Jing,C., Jones,J., Korchina,V., Lara,F., Lee,S.,
Li,H., Mims,S., Munidasa,M., Ngo,R., Nguyen,L., Ongeri,F.,
Osuji,N., Palculict,T., Patil,S., Paul,S., Pellon,M., Perales,L.,
Pu,L., Puazo,M., Qin,X., Qu,C., Raj,R., Saada,N., Shafer,J.,
Shah,N., Song,H., Tang,L., Vee,V., Wang,Y., Weissenberger,G.,
Xin,Y., Nazareth,L., Newsham,I., Wang,M., Wu,Y., Worley,K.C.,
Reid,J.G., Han,Y., Muzny,D.M. and Gibbs,R.
TITLE Direct Submission
JOURNAL Submitted (28-APR-2011) Human Genome Sequencing Center, Department
of Molecular and Human Genetics, Baylor College of Medicine, One
Baylor Plaza, Houston, TX 77030, USA
COMMENT Contact ncbi-contacts@bcm.tmc.edu for more information.
This revised assembly of the sea urchin incorporated Illumina data
using the Atlas-Link and Atlas-GapFill software to combine with the
existing assembly of Sanger and SOLiD data.
##Genome-Assembly-Data-START##
Assembly Method :: Atlas v. WGS for Sanger Assembly,
Atlas-Link and Atlas-GapFill for SOLiD and
Illumina improvement
Assembly Name :: Spur_3.1
Genome Coverage :: 8.3x Sanger; 18x SOLiD; 40x Illumina
Sequencing Technology :: Sanger; SOLiD; Illumina
##Genome-Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1049
/organism="Strongylocentrotus purpuratus"
/mol_type="genomic DNA"
/submitter_seqid="Contig362"
/db_xref="taxon:7668"
/sex="male"
/tissue_type="sperm"
ORIGIN
1 caatttaata tgtttaacaa aattcgcgta ctttcggcgt agaaacttga cgcagaaagt
61 acgcnctttt ttacgtaaca ctacgctact aaactaaaca aactgcatct ttaaatgaat
121 taatgaaaaa ttagcccaag aaaaatgagc ccccgaaaga taaaaaagta gccccccccc
181 cccccaaatt ttcccaaaat ttgatataga tcgagtcccc gaaaaaaaaa tctttcactg
241 gattctacgc tcacagtccc acacacagtc gagtcaattt gtgcacaaac cgtccgattt
301 ttcgcgtaaa atctttactt tgaaaataat tgtacacatt ttgtgaacaa tgccaacaaa
361 atcataatcc aagcctctgc atatgtagtc ttttcatgaa actacattga aatcacaaca
421 ttaataatgc aaataaatcg taattatcga gatcctatct gacatagttt gttttacgat
481 gcgccattta tggtcaaaca gcatatatta taaaaattct gtatataaag ataatctttt
541 tttttgttga tagcacatag gcctctatct atctatttgg ccccctcccc tagaatcccg
601 tggattttcc acgggtcctg ctagtcattt actactaggt caaatcaaat ccatgcaata
661 gattgaaatt gggacctcgt gatatattta tccctcatca gtgatgtgga gagtgagtga
721 gggaagaaca agatgaaagc atgtgatggg gaaagtgttc atcaggagat tgtctaggtt
781 catttgtgtg gcattgatct ccatcagcct gcctcatcct aacctttctg catcgatgcc
841 tcactctctc ttctcgctga ttggagctga tgagaagatg catggatggg atgggggcat
901 ggtggaaggg aacggtggag ttcattctat gtatgatcca attctgagac tgggtgtttg
961 acaacagacc ccaggcatgc tccatctagg gaaagataag atacgtaatt catgatttta
1021 gaagagcctc taaatatagg caagtcagt
//