LOCUS AADL01000793 739 bp DNA linear ENV 18-AUG-2008
DEFINITION MAG: Leptospirillum sp. Group III AMC_Cont793, whole genome shotgun
sequence.
ACCESSION AADL01000793 AADL01000000
VERSION AADL01000793.1
DBLINK BioProject: PRJNA13696
BioSample: SAMN02954273
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE Leptospirillum sp. Group III (mine drainage metagenome)
ORGANISM Leptospirillum sp. Group III
Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae;
Leptospirillum.
REFERENCE 1 (bases 1 to 739)
AUTHORS Tyson,G.W., Chapman,J., Hugenholtz,P., Allen,E.E., Ram,R.J.,
Richardson,P.M., Solovyev,V.V., Rubin,E.M., Rokhsar,D.S. and
Banfield,J.F.
TITLE Community structure and metabolism through reconstruction of
microbial genomes from the environment
JOURNAL Nature 428 (6978), 37-43 (2004)
PUBMED 14961025
REFERENCE 2 (bases 1 to 739)
AUTHORS Allen,E.E., Tyson,G.W., Whitaker,R.J., Detter,J.C., Richardson,P.M.
and Banfield,J.F.
TITLE Genome dynamics in a natural archaeal population
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 104 (6), 1883-1888 (2007)
PUBMED 17267615
REFERENCE 3 (bases 1 to 739)
AUTHORS Simmons,S.L., Dibartolo,G., Denef,V.J., Goltsman,D.S., Thelen,M.P.
and Banfield,J.F.
TITLE Population genomic analysis of strain variation in Leptospirillum
group II bacteria involved in acid mine drainage formation
JOURNAL PLoS Biol. 6 (7), E177 (2008)
PUBMED 18651792
REFERENCE 4 (bases 1 to 739)
CONSRTM DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (27-JAN-2004) DOE Joint Genome Institute, 2800 Mitchell
Drive - B100, Walnut Creek, CA 94598-1698, USA
REFERENCE 5 (bases 1 to 739)
AUTHORS DiBartolo,G., Denef,V.J., Aliaga Goltsman,D.S., Simmons,S.L.,
Banfield,J.F., Lucas,S.L., Copeland,A., Glavina del Rio,T.,
Dalin,E., Tice,H., Bruce,D., Goodwin,L. and Pitluck,S.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2008) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
Contact: Paul Richardson
microbes@cuba.jgi-psf.org
An environmental sample consisting of an acid mine drainage
microbial biofilm was obtained and sequenced. This has resulted in
the culture-independent recovery of two near-complete microbial
genomes and partial recovery of three other genomes. The scaffolds
of these five genomes are:
DS995259-DS995275 (Leptospirillum sp. Group II '5-way CG')
CH003545-CH003921 (Leptospirillum sp. Group III)
CH003922-CH004070 (Ferroplasma acidarmanus Type I)
CH004071-CH004104 (Ferroplasma sp. Type II)
CH004105-CH004435 (Thermoplasmatales archaeon Gpl)
Additional Leptospirillum sp. Group II '5-way CG' sequences were
identified and that genome was updated, as discussed in PubMed
18651792. Thus, contigs AADL01000001-AADL01000109 were replaced by
contigs AADL01002456-AADL01002534 in August 2008, and scaffolds
CH003520-CH003544 were replaced by scaffolds DS995259-DS995275 in
September 2008. Scaffolds DS995259-DS995275 are annotated.
FEATURES Location/Qualifiers
source 1..739
/organism="Leptospirillum sp. Group III"
/mol_type="genomic DNA"
/isolation_source="pink biofilm microbial community
collected from flowing acid mine drainage (pH 0.8, 42C)"
/db_xref="taxon:261386"
/environmental_sample
/country="USA: Richmond Mine at Iron Mountain 5-way site,
CA"
/lat_lon="40.68 N 122.2 W"
/metagenome_source="mine drainage metagenome"
/note="metagenomic"
ORIGIN
1 ttcgacaggc tctagcctgg actcaaaagt gggaaaaggt tcgggacctg tcaaatgcca
61 accgaaagaa ggttttaaaa gatgagcgga cagttcgaat gcttggtgcg gcctattatc
121 ttggggttgc cagggagcga agccggaggg aacgcttcca tggcgcactc gaagctcttc
181 gaattgcccg tacgtttact ccttcagatc cggtcctggc aagagaggtc cagcaggtca
241 aggctagaat tatcgtttcg ggggaggcgg ggaaggattg gggggaggct gttcagaaac
301 tactggccct caaaagaaga aatccccagg atcatgcgat tgacccaacc cttggatggg
361 cttattcaaa actagcggaa agtgaatata cgtcaggtcg cctaccctta gcatttcagt
421 tcacccagtc tgcccttgct tacgatcctg gcaatgaagg ggctgtcaga ctgaaagacc
481 ggatctctcg aagggttaac ctttttgtgg cgaaggcgga agccgattat cggaggaagg
541 actttctggg ggcccgagac aatctctcgc gcgcattgga gattgatccc aagaatgaga
601 aggcaaagga agactggaag atccttcaga agaccccaac gggattggcg tcacatccct
661 aattttacaa gacaggagat ctaaagttta tgaagacgga ttttgtgaaa ggtcatggtc
721 tgggaaatga ttatatgtc
//