LOCUS AADL01000779 1214 bp DNA linear ENV 18-AUG-2008
DEFINITION MAG: Leptospirillum sp. Group III AMC_Cont779, whole genome shotgun
sequence.
ACCESSION AADL01000779 AADL01000000
VERSION AADL01000779.1
DBLINK BioProject: PRJNA13696
BioSample: SAMN02954273
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE Leptospirillum sp. Group III (mine drainage metagenome)
ORGANISM Leptospirillum sp. Group III
Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae;
Leptospirillum.
REFERENCE 1 (bases 1 to 1214)
AUTHORS Tyson,G.W., Chapman,J., Hugenholtz,P., Allen,E.E., Ram,R.J.,
Richardson,P.M., Solovyev,V.V., Rubin,E.M., Rokhsar,D.S. and
Banfield,J.F.
TITLE Community structure and metabolism through reconstruction of
microbial genomes from the environment
JOURNAL Nature 428 (6978), 37-43 (2004)
PUBMED 14961025
REFERENCE 2 (bases 1 to 1214)
AUTHORS Allen,E.E., Tyson,G.W., Whitaker,R.J., Detter,J.C., Richardson,P.M.
and Banfield,J.F.
TITLE Genome dynamics in a natural archaeal population
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 104 (6), 1883-1888 (2007)
PUBMED 17267615
REFERENCE 3 (bases 1 to 1214)
AUTHORS Simmons,S.L., Dibartolo,G., Denef,V.J., Goltsman,D.S., Thelen,M.P.
and Banfield,J.F.
TITLE Population genomic analysis of strain variation in Leptospirillum
group II bacteria involved in acid mine drainage formation
JOURNAL PLoS Biol. 6 (7), E177 (2008)
PUBMED 18651792
REFERENCE 4 (bases 1 to 1214)
CONSRTM DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (27-JAN-2004) DOE Joint Genome Institute, 2800 Mitchell
Drive - B100, Walnut Creek, CA 94598-1698, USA
REFERENCE 5 (bases 1 to 1214)
AUTHORS DiBartolo,G., Denef,V.J., Aliaga Goltsman,D.S., Simmons,S.L.,
Banfield,J.F., Lucas,S.L., Copeland,A., Glavina del Rio,T.,
Dalin,E., Tice,H., Bruce,D., Goodwin,L. and Pitluck,S.
CONSRTM US DOE Joint Genome Institute (JGI-PGF)
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2008) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT URL -- http://www.jgi.doe.gov
Contact: Paul Richardson
microbes@cuba.jgi-psf.org
An environmental sample consisting of an acid mine drainage
microbial biofilm was obtained and sequenced. This has resulted in
the culture-independent recovery of two near-complete microbial
genomes and partial recovery of three other genomes. The scaffolds
of these five genomes are:
DS995259-DS995275 (Leptospirillum sp. Group II '5-way CG')
CH003545-CH003921 (Leptospirillum sp. Group III)
CH003922-CH004070 (Ferroplasma acidarmanus Type I)
CH004071-CH004104 (Ferroplasma sp. Type II)
CH004105-CH004435 (Thermoplasmatales archaeon Gpl)
Additional Leptospirillum sp. Group II '5-way CG' sequences were
identified and that genome was updated, as discussed in PubMed
18651792. Thus, contigs AADL01000001-AADL01000109 were replaced by
contigs AADL01002456-AADL01002534 in August 2008, and scaffolds
CH003520-CH003544 were replaced by scaffolds DS995259-DS995275 in
September 2008. Scaffolds DS995259-DS995275 are annotated.
FEATURES Location/Qualifiers
source 1..1214
/organism="Leptospirillum sp. Group III"
/mol_type="genomic DNA"
/isolation_source="pink biofilm microbial community
collected from flowing acid mine drainage (pH 0.8, 42C)"
/db_xref="taxon:261386"
/environmental_sample
/country="USA: Richmond Mine at Iron Mountain 5-way site,
CA"
/lat_lon="40.68 N 122.2 W"
/metagenome_source="mine drainage metagenome"
/note="metagenomic"
ORIGIN
1 gcctcctgcc agggggagct cgccctctcc gcccccctnt atgtcaccgg caccctcgag
61 cgcaacgact tcggcaccaa gctccgcacc acccgggtca ccaccctctc ccagctgagc
121 tcggtgctct acaagatggt gagcatccgg ctcaggaccg acggcctcgc ccgccgggac
181 ctcgaggatc tccgggagat cctcgccgcc caccccggtc ccctgccctc cctcctcgag
241 atcaccgaga tggtcacccc ccgggcccgc tacatcatcc ccacccgaca gaatgtctcg
301 ccctcggaag agctgatcca tcgtctcaag tcccggttcg gccccgatgc ggtagtcctg
361 tccaaggagc tcgatccggc cctctccacc tatctcatcg ccacccgcac ccgctcccag
421 gggcgacggg agccccgcgg ggcccgctga catttccggg cccgccggcc gctttcggcc
481 attttccatt gaccccgcgc aatcgtgagt tcaagactct ttcgaaggga ggggtgcggg
541 aaaaatcgtc cacacataat ccatatttcc tgattgaaca tcccaaacca agaggaattc
601 atggccgaat cccttcctcc aattcccgtt gaatccattg cctccagaat cttcctggtt
661 cgtggtcaaa aggtcatgct cgattccgac ctggccgaac tgtacggggt cacgacgagc
721 gccctcaacc aggccgtccg acggaatatc gaccgatttc cctcagactt catgtttcag
781 atgacagatt ctgaattctc aaacttgaaa tcacaatgtg tgacatcaag ttggggggcc
841 gccggaaact cccgctggca ttcacggaac agggagtgtc aatactctcc agcgtgttga
901 acagcgagca gtccctccag gtaaatatcg ccatcatgcg ggcattcgtc cggattcggg
961 aaatgctctc cacccacaag gaactggcct tcaaactgga ggagctggag cggaaggtcg
1021 ggattcacga cccaaccatc gttcaactga tcgaggcgat ccggcaattg atggaacttc
1081 cagcggagaa aaggaacccg atcggtttta caaccaacga ggagggataa tgttcactgt
1141 agacgatatg gctcgatttt ctcgagttct ctactaaaac gattccatga atccggacct
1201 cctgaacctt tcct
//