GABZ00000000.1 Desmodus rotundus
- Master
# of Contigs: 8,786 # of Proteins: 8,786 Total length: 15,326,214 bp BioProject: PRJNA178123 Sequence Read Archive: SRR606899, SRR606900, SRR606902, SRR606905, SRR606908, SRR606910, SRR606911, SRR606912 Keywords: TSA Annotation: Contigs Organism: Desmodus rotundus – show lineagehide lineage Biosource: /dev_stage = adult/mol_type = mRNA/sex = female/tissue_type = salivary glandTSA: GABZ01000001:GABZ01008786 Reference: The Vampirome: Transcriptome and Proteome Analysis of the Submandibular and Accessory Glands of the Vampire Bat and Vector of Human Rabies, Desmodus rotundus : Unpublished – Francischetti,I.M.B., Assumpcao,T.C.F., Ma,D., Vicente,E.C., Ribeiro,J.M.C.Submission: Submitted (05-NOV-2012) Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, 12735 Twinbrook Parkway room 2E32D, Rockville, MD 20852, USA – Francischetti,I.M.B., Assumpcao,T.C.F., Ma,D., Vicente,E.C., Ribeiro,J.M.C.The Desmodus rotundus transcriptome shotgun assembly (TSA) project has the project accession GABZ00000000. This version of the project (01) has the accession number GABZ01000000, and consists of sequences GABZ01000001-GABZ01008786.
Abyss was run with every even k value parameter from 24 to 96 and minimum coverage of 10. Trinity was run with minimum coverage of 10. Combined assemblies were clustered by a parallelized pipeline of blasts feeding cap3 assemblers with a decreasing word size (-W) from 300 to 56.
##Assembly-Data-START## Assembly Method : abyss v. 1.3.4; trinity v. r2012-06-08; cap3 v. 1999 Sequencing Technology : Illumina ##Assembly-Data-END## - Contigs
- Proteins
- Download
Contigs:
GenBank:GABZ01.1.gbff.gz 10.6 MbFASTA:GABZ01.1.fsa_nt.gz 4.5 MbASN.1:GABZ01.1.bbs.gz 7.8 MbProteins:
GenPept:GABZ01.1.gnp.gz 4 MbFASTA:GABZ01.1.fsa_aa.gz 2.8 Mb- History
Minor Version Create Date 1 11/15/2012 7 11/12/2017 8 04/01/2024